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Supervised Machine Learning for Semi-Quantification of Extracellular DNA in Glomerulonephritis
Published on: June 18, 2020
Removing segmentation inconsistencies with semi-supervised non-adjacency constraint.
Pierre-Antoine Ganaye1, Michaël Sdika1, Bill Triggs2
1Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR 5220, U1206, F-69100, LYON, France.
This study introduces NonAdjLoss, a novel method to improve anatomical region segmentation in medical images by penalizing incorrect spatial relationships. This deep learning technique enhances accuracy, especially with limited labeled data.
Area of Science:
- Medical image analysis
- Deep learning
- Computer vision
Background:
- Deep learning advances medical image analysis, yet segmentation faces challenges like data variability and exploiting anatomical knowledge.
- Accurate segmentation of anatomical regions is crucial for diagnosis and treatment planning.
Purpose of the Study:
- To improve region-labeling consistency in medical image segmentation using deep learning.
- To address the challenge of incorporating anatomical knowledge into segmentation networks.
Main Methods:
- Introduction of NonAdjLoss, an adjacency-graph based auxiliary training loss.
- NonAdjLoss penalizes anatomically-incorrect adjacency relationships in segmentation outputs.
- The method supports both fully-supervised and semi-supervised training extensions.
Main Results:
- Substantial reduction in segmentation anomalies observed.
- Demonstrated effectiveness on brain MRI (MICCAI-2012, IBSRv2) and whole-body CT (Anatomy3) datasets.
- Performance significantly improved with the semi-supervised training extension.
Conclusions:
- NonAdjLoss enhances deep learning-based medical image segmentation by enforcing anatomical consistency.
- The proposed loss function is effective in reducing segmentation errors, particularly in semi-supervised settings.
- This approach offers a promising direction for more reliable automated medical image analysis.
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