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Slide Preparation Method to Preserve Three-dimensional Chromatin Architecture of Testicular Germ Cells
Published on: January 10, 2014
Molecular Basis of Cisplatin Resistance in Testicular Germ Cell Tumors
Violeta Bakardjieva-Mihaylova1, Karolina Skvarova Kramarzova2, Martina Slamova3
1Department of Pediatric Hematology and Oncology, CLIP, 2nd Faculty of Medicine, Charles University and University Hospital Motol, 150 00 Prague, Czech Republic. violeta.bakardjieva-mihaylova@lfmotol.cuni.cz.
Abstract:
The emergence of cisplatin (CDDP) resistance is the main cause of treatment failure and death in patients with testicular germ cell tumors (TGCT), but its biologic background is poorly understood. To study the molecular basis of CDDP resistance in TGCT we prepared and sequenced CDDP-exposed TGCT cell lines as well as 31 primary patients' samples. Long-term exposure to CDDP increased the CDDP resistance 10 times in the NCCIT cell line, while no major resistance was achieved in Tera-2. Development of CDDP resistance was accompanied by changes in the cell cycle (increase in G1 and decrease in S-fraction), increased number of acquired mutations, of which 3 were present within ATRX gene, as well as changes in gene expression pattern. Copy number variation analysis showed, apart from obligatory gain of 12p, several other large-scale gains (chr 1, 17, 20, 21) and losses (chr X), with additional more CNVs found in CDDP-resistant cells (e.g., further losses on chr 1, 4, 18, and gain on chr 8). In the patients' samples, those who developed CDDP resistance and died of TGCT (2/31) showed high numbers of acquired aberrations, both SNPs and CNVs, and harbored mutations in genes potentially relevant to TGCT development (e.g., TRERF1, TFAP2C in one patient, MAP2K1 and NSD1 in another one). Among all primary tumor samples, the most commonly mutated gene was NSD1, affected in 9/31 patients. This gene encoding histone methyl transferase was also downregulated and identified among the 50 most differentially expressed genes in CDDP-resistant NCCIT cell line. Interestingly, 2/31 TGCT patients harbored mutations in the ATRX gene encoding a chromatin modifier that has been shown to have a critical function in sexual differentiation. Our research newly highlights its probable involvement also in testicular tumors. Both findings support the emerging role of altered epigenetic gene regulation in TGCT and CDDP resistance development.
Insights
Cisplatin resistance in testicular germ cell tumors (TGCT) is poorly understood. This study reveals genetic alterations and epigenetic changes, including NSD1 and ATRX mutations, contributing to cisplatin resistance in TGCT.
Area of Science:
- Genomics
- Cancer Biology
- Epigenetics
Background:
- Cisplatin resistance is a major cause of treatment failure and mortality in testicular germ cell tumors (TGCT).
- The molecular mechanisms underlying cisplatin resistance in TGCT remain largely unknown.
Purpose of the Study:
- To investigate the molecular basis of cisplatin resistance in TGCT by analyzing genetic and gene expression changes.
- To identify potential therapeutic targets for overcoming cisplatin resistance in TGCT.
Main Methods:
- Sequencing of cisplatin-exposed TGCT cell lines and 31 primary patient samples.
- Analysis of mutations, copy number variations (CNVs), and gene expression patterns.
- Comparison of genetic profiles between cisplatin-sensitive and cisplatin-resistant tumors.
Main Results:
- Cisplatin resistance development was associated with cell cycle changes, increased mutations (including in ATRX), and altered gene expression.
- Copy number variations, such as gain of 12p and losses on chr X, were observed in resistant cells.
- Mutations in NSD1 (9/31 patients) and ATRX (2/31 patients) were identified in primary TGCT samples, with NSD1 also found to be downregulated in resistant cells.
Conclusions:
- Altered epigenetic gene regulation plays a significant role in TGCT development and cisplatin resistance.
- NSD1 and ATRX mutations represent potential biomarkers and therapeutic targets for cisplatin-resistant TGCT.
- Further research into epigenetic modifiers may lead to novel treatment strategies for TGCT.
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