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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
Next-generation sequencing approach to hyperCKemia: A 2-year cohort study
Anna Rubegni1, Alessandro Malandrini1, Claudia Dosi1
1IRCCS Fondazione Stella Maris (A.R., G.A., J.B., G.B., S.L., F.M.S., D.C.), Pisa, Italy; Department of Medicine (A.M., C.B., M.T.D., A.F., F.G., S.S., N.V.), Surgery and Neurosciences, University of Siena; Department of Clinical and Experimental Medicine (C.D., G.S., D.T.), University of Pisa; Metabolic Disease Unit (M.A.D., M.S.), AOU Meyer Children Hospital, Florence; Department of Molecular and Developmental Medicine (S.G.), University of Siena, Siena; Pediatric Neurology (R.G., F.M.), AOU Meyer Children Hospital, Florence; Neurophysiopathology Multiple Sclerosis Center Hospital Binaghi (M.A.M.), Cagliari; Pediatric Neurology and Nemo Clinical Centre (E.M.), Fondazione Policlinico Universitario "A. Gemelli IRCSS", Università Cattolica del Sacro Cuore, Rome; and Department of Neurosciences (P.T.), Biomedicine and Movement Sciences, University of Verona, Italy.
Next-generation sequencing (NGS) successfully identified the genetic cause in 50% of patients with unexplained high creatine kinase (CK) levels. This molecular diagnostic approach is crucial for identifying progressive muscular disorders, even with mild symptoms.
Area of Science:
- Clinical Neurology
- Molecular Genetics
- Genomic Medicine
Background:
- HyperCKemia (elevated creatine kinase levels) can indicate underlying muscular disorders.
- Many cases of asymptomatic or paucisymptomatic hyperCKemia remain molecularly undiagnosed.
- Genetic heterogeneity complicates the diagnosis of muscular dystrophies and myopathies.
Purpose of the Study:
- To evaluate the utility of next-generation sequencing (NGS) in diagnosing genetically undiagnosed hyperCKemia.
- To investigate the genetic basis of asymptomatic or paucisymptomatic hyperCKemia.
- To assess the diagnostic yield of targeted gene panels in neuromuscular disorders.
Main Methods:
- Analyzed 66 patients with undiagnosed hyperCKemia using a targeted NGS panel.
- The panel covered 78 genes associated with limb-girdle muscular dystrophies, rhabdomyolysis, and myopathies.
- Investigated coding exons and flanking intronic regions for pathogenic variants.
Main Results:
- Achieved a 50% diagnostic yield, identifying the genetic cause in 33 out of 66 patients.
- Found variants of unknown significance in 26% of cases and remained undiagnosed in 24%.
- Common clinical features included mild proximal muscle weakness (27%) and myalgia (24%); 14 patients remained asymptomatic.
Conclusions:
- NGS is an effective first-tier diagnostic approach for genetically heterogeneous conditions like hyperCKemia.
- Isolated hyperCKemia can be an early sign of progressive muscular disorders.
- Molecular diagnosis advances clinical neurology by identifying genetic underpinnings and guiding surveillance.
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