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Updated: Jan 19, 2026
Radical Formation: Abstraction
Benchmarking dual-level MS-Tor and DLPNO-CCSD(T) methods for H-abstraction from methyl pentanoate by an OH radical
Yanlei Shang1, Hongbo Ning1, Jinchun Shi1
1Key Laboratory of Advanced Technologies of Materials, Ministry of Education, Southwest Jiaotong University, Chengdu, Sichuan 610031, P. R. China. hbning@swjtu.edu.cn jcshi@pims.ac.cn and Institute of Material Dynamics, Southwest Jiaotong University, Chengdu, Sichuan 610031, P. R. China.
Abstract:
Methyl pentanoate (MP) was recently proposed as a potential biodiesel surrogate due to its negative temperature coefficient region. To provide a basis for constructing an accurate mechanism, chemical kinetics of H-abstraction from MP by an OH radical are investigated theoretically at 200-2000 K. M06-2X/cc-pVTZ is applied for geometry optimizations and frequency calculations. Given the long alkyl-chain in MP, the multi-structural torsional anharmonicity is characterized by using the dual-level MS-T method due to its relatively low computational cost and established accuracy. In particular, AM1 and M06-2X/cc-pVTZ are adopted as low-level and high-level methods in dual-level MS-T, respectively. The results of dual-level MS-T are further used to benchmark against the full high-level method (M06-2X/cc-pVTZ), leading to an uncertainty of less than 30% in the high temperature range. For the single-point energy calculations, the lower computational cost DLPNO-CCSD(T) method is first used to benchmark against the gold-standard method CCSD(T) for small methyl ester (C2-C4) + OH reaction systems, yielding an overestimation of less than 1.1 kcal mol-1 for barrier height; it is then used to refine the electronic energies for the present reaction system MP + OH. Phase-space theory and conventional transition state theory are used to calculate the H-abstraction rate constants. After compensating the uncertainty of barrier height, the calculated phenomenological H-abstraction rate constants agree well with the experimental data at 263-372 K. Branching ratio analysis indicates that the β-site H abstraction is the dominant channel at 200-1200 K due to its lowest barrier height.
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