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Updated: Jan 19, 2026
Predicting Products: SN1 vs. SN2
In Silico Structural Prediction and Production of a Chimeric Recombinant Dickkopf-1 (DKK-1) Antigen
Fatemeh Malaei1, Mohammad Javad Rasaee2, Ali Mohammad Latifi3
1Department of Medical Biotechnology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran. fatemeh.malaei@modares.ac.ir.
Abstract:
Dickkopf (DKK) family of proteins are known as antagonists for the Wnt-β-catenin signaling pathway. It is suggested that the Dickkopf-1 (DKK-1) has a role in several diseases such as hepatocellular carcinomas, hepatoblastomas, Wilms' tumors, lung cancer and Myeloma bone disease. The aim of the present study was to produce a chimeric-recombinant DKK-1 protein in order to induce immune response against the antigen. The recombinant Dickkopf-1 (rDKK-1) protein was designed using bioinformatics analysis. The standard methods were used for cloning, expression and purification. The structure of recombinant protein was analyzed by spectroscopy methods. Enzyme-linked immunosorbent assay (ELISA) and Western blotting were performed to confirm the recombinant protein using a commercial anti-DKK-1 (whole protein) polyclonal antibody. The immunogenicity of the recombinant DKK-1 was assessed by immunizing, intraperitoneally, BALB/C mice four times with the 31-kDa and 45-kDa purified rDKK-1 cloned in pET28a and pET32a vectors respectively. The antibody titer was measured in due course of time. Stronger immunogenic parts of the protein were selected based on in-silico predictions and recombinant protein was successfully designed. The chimeric gene was sub-cloned, expressed, purified and refolded. The purified protein was confirmed by Western blotting and ELISA. The three dimensional structural was confirmed by CD spectrum and predicted structures by bioinformatics tools, revealed the stability of helix structures. rDKK-1 protein was capable of inducing immune response with high titer antibody and excessive humoral immune response. No significant difference was observed between immunization by 31-kDa and 45-kDa antigen.
Insights
Researchers developed a recombinant Dickkopf-1 (rDKK-1) protein to target Wnt signaling in diseases. This rDKK-1 successfully induced a strong immune response and high antibody titers in mice.
Area of Science:
- Biochemistry
- Immunology
- Molecular Biology
Background:
- Dickkopf-1 (DKK-1) antagonizes the Wnt-β-catenin pathway.
- DKK-1 is implicated in various cancers, including hepatocellular carcinoma and lung cancer, as well as myeloma bone disease.
Purpose of the Study:
- To engineer a chimeric-recombinant DKK-1 (rDKK-1) protein.
- To assess the immunogenicity of the rDKK-1 protein and its potential to induce an immune response.
Main Methods:
- Bioinformatics analysis for designing rDKK-1.
- Standard molecular cloning, protein expression, purification, and refolding techniques.
- Confirmation using spectroscopy, ELISA, and Western blotting; immunogenicity tested in BALB/C mice.
Main Results:
- Successfully designed, cloned, expressed, and purified rDKK-1 (31-kDa and 45-kDa variants).
- Spectroscopic analysis confirmed protein structure, with CD spectra indicating stable helix structures.
- Immunization in mice elicited a robust humoral immune response with high antibody titers.
Conclusions:
- The engineered rDKK-1 protein is immunogenic and capable of inducing significant humoral immune responses.
- The study demonstrates the potential of rDKK-1 as an antigen for therapeutic or diagnostic applications targeting Wnt pathway-related diseases.
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