Acid Mine Drainage as Habitats for Distinct Microbiomes: Current Knowledge in the Era of Molecular and Omic...

The last decade has witnessed growth in scientific interest towards studying the biodiversity and ecology in extreme environments. Acid Mine Drainage (AMD), formed through the bio-oxidation of metal sulphides, is a typical extreme environment that is inhospitable to most life forms. Through the application of traditional culture-based molecular techniques, it has been established that AMD is home to a low diversity, specialized and novel microbial community that plays a critical role in its formation. Intensive efforts have been channeled towards understanding the ecology, microbial biodiversity, processes and metabolic networks within these simple ecosystems. Molecular techniques using high-throughput next-generation sequencing platforms have taken center stage in discerning both the taxonomic and functional diversity in these microbial communities. Recently developed post-genomic approaches as well have been particularly instrumental in deciphering in situ interactions within microbial communities and the environment. In this review, a critical synopsis of the current applications of advanced molecular techniques in probing microbial and functional diversity in AMD environments is presented.