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Updated: Jan 19, 2026

Quantitative PCR-based Assay to Measure Sonic Hedgehog Signaling in Cellular Model of Ciliogenesis
Published on: January 31, 2025
NRF2-dependent gene expression promotes ciliogenesis and Hedgehog signaling
Ana Martin-Hurtado1,2, Raquel Martin-Morales1,2, Natalia Robledinos-Antón1,2,3
1Alberto Sols Biomedical Research Institute UAM-CSIC and Department of Biochemistry, School of Medicine, Autonomous University of Madrid (UAM), Madrid, Spain.
Nuclear factor erythroid 2-related factor 2 (NRF2) and primary cilia mutually regulate each other. NRF2 impacts cilia formation and function, while cilia influence NRF2 activity in differentiated cells.
Area of Science:
- Cell Biology
- Molecular Biology
- Developmental Biology
Background:
- Nuclear factor erythroid 2-related factor 2 (NRF2) is a key regulator of cellular responses.
- Primary cilia act as cellular antennae, crucial for signaling pathways.
- The interplay between NRF2 and primary cilia is largely unexplored, particularly outside of human embryonic stem cells (hESCs).
Purpose of the Study:
- To investigate the reciprocal regulatory relationship between NRF2 and primary cilia.
- To determine if the Primary Cilia-Autophagy-NRF2 (PAN) axis functions in differentiated cells.
- To elucidate NRF2's role in primary cilia formation, function, and associated signaling pathways.
Main Methods:
- Utilized fibroblasts lacking primary cilia to assess NRF2 activity.
- Employed autophagy-activating mTOR inhibitors to rescue NRF2 activity.
- Analyzed cilia formation, length, and Hedgehog signaling in NRF2-null cells.
- Investigated the expression of ciliogenic and Hedgehog pathway genes, including GLI2 and GLI3.
Main Results:
- Fibroblasts lacking primary cilia exhibit elevated NRF2 activity, which is normalized by mTOR inhibitors, confirming the PAN axis in differentiated cells.
- NRF2 deficiency leads to reduced cilia number and length, and impaired Hedgehog signaling.
- NRF2 promotes the expression of genes essential for cilia formation and Hedgehog pathway function, including GLI2 and GLI3.
- Reduced GLI2 and GLI3 levels in NRF2-null cells are linked to NRF2 binding to their promoter regions.
Conclusions:
- NRF2 and primary cilia engage in a reciprocal regulatory loop.
- The PAN axis is functional in differentiated cells, linking cilia, autophagy, and NRF2.
- NRF2 is essential for proper cilia development and Hedgehog pathway signaling, potentially through regulating GLI transcription factors.
- These findings highlight the significance of NRF2 and ciliary signaling in human health and disease.
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