Predicting early risk of chronic kidney disease in cats using routine clinical laboratory tests and machine learning

Advanced machine learning methods combined with large sets of health screening data provide opportunities for diagnostic value in human and veterinary medicine.

To derive a model to predict the risk of cats developing chronic kidney disease (CKD) using data from electronic health records (EHRs) collected during routine veterinary practice.

A total of 106 251 cats that attended Banfield Pet Hospitals between January 1, 1995, and December 31, 2017.

Longitudinal EHRs from Banfield Pet Hospitals were extracted and randomly split into 2 parts. The first 67% of the data were used to build a prediction model, which included feature selection and identification of the optimal neural network type and architecture. The remaining unseen EHRs were used to evaluate the model performance.

The final model was a recurrent neural network (RNN) with 4 features (creatinine, blood urea nitrogen, urine specific gravity, and age). When predicting CKD near the point of diagnosis, the model displayed a sensitivity of 90.7% and a specificity of 98.9%. Model sensitivity decreased when predicting the risk of CKD with a longer horizon, having 63.0% sensitivity 1 year before diagnosis and 44.2% 2 years before diagnosis, but with specificity remaining around 99%.

The use of models based on machine learning can support veterinary decision making by improving early identification of CKD.