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Related Concept Videos

Sampling Plans01:23

Sampling Plans

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Sampling is a crucial step in analytical chemistry, allowing researchers to collect representative data from a large population. Common sampling methods include random, judgmental, systematic, stratified, and cluster sampling.
Random sampling is a method where each member of the population has an equal chance of being selected for the sample. It involves selecting individuals randomly, often using random number generators or lottery-type methods. For example, when analyzing the properties of a...
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Sampling Methods: Sample Types01:18

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Sampling materials are classified into three main types: solid, liquid, and gas.
Solid samples include a variety of substances, such as sediments from water bodies, soil, metals, and biological tissues. Two standard methods for extracting sediments from water bodies are grab sampling and piston coring. Grab sampling involves using a device to collect a discrete sediment sample from the bottom of a water body with minimal disturbance. Grab samples do not always represent the entire area due to...
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Sampling is a technique to select a portion (or subset) of the larger population and study that portion (the sample) to gain information about the population. The sampling method ensures that samples are drawn without bias and accurately represent the population. Because measuring the entire population in a study is not practical, researchers use samples to represent the population of interest.
To choose a stratified sample, divide the population into groups called strata and then take a...
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Sampling Methods: Overview01:06

Sampling Methods: Overview

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A sample refers to a smaller subset representative of a larger population. In analytical chemistry, studying or analyzing an entire population is often impractical or impossible. Therefore, samples are used to draw inferences and generalize the whole population. The sampling method selects individuals or items from a population to create a sample. Standard sampling methods include random, judgemental, systematic, stratified, and cluster sampling. 
In analytical chemistry, the choice of...
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Watershed Planning within a Quantitative Scenario Analysis Framework
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Nested Basin-Sampling.

Matthew Griffiths1, David J Wales1

  • 1Department of Chemistry , University of Cambridge , Lensfield Road , Cambridge CB2 1EW , United Kingdom.

Journal of Chemical Theory and Computation
|September 27, 2019
PubMed
Summary
This summary is machine-generated.

We introduce nested basin-sampling (NBS), an embarrassingly parallel method for evaluating thermodynamic properties in complex energy landscapes. NBS accurately captures phase transitions, outperforming standard nested sampling.

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Area of Science:

  • Computational Chemistry
  • Statistical Mechanics
  • Thermodynamics

Background:

  • Evaluating thermodynamic properties in systems with broken ergodicity is computationally challenging.
  • Traditional methods like standard nested sampling (NS) may fail to capture subtle phase transitions.
  • Efficient sampling schemes are crucial for accurate thermodynamic calculations.

Purpose of the Study:

  • To develop an embarrassingly parallel method for thermodynamic property evaluation.
  • To introduce a novel sampling scheme, the No Galilean U-Turn Sampler (NoGUTS).
  • To assess the performance of the new method against existing techniques for complex systems.

Main Methods:

  • Development of nested basin-sampling (NBS), an embarrassingly parallel approach.
  • Introduction of the NoGUTS sampler, integrating No U-Turn Sampler (NUTS) and Galilean Monte Carlo.
  • Application to a 31-atom Lennard-Jones cluster exhibiting a low-temperature phase transition.

Main Results:

  • NBS successfully reproduced the full heat capacity curve, including a solid-solid phase transition.
  • The NoGUTS sampler demonstrated efficient generation of new live points.
  • Standard nested sampling (NS) failed to resolve the low-temperature phase transition at similar computational cost.

Conclusions:

  • NBS provides an accurate and efficient method for evaluating thermodynamic properties in systems with broken ergodicity.
  • The NoGUTS sampler enhances sampling efficiency for complex energy landscapes.
  • NBS offers a significant improvement over standard NS for resolving phase transitions.