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TITAN: A Code for Modeling and Generating Electric Fields-Features and Applications to Enzymatic Reactivity.
Thijs Stuyver1,2, Jing Huang1,3, Dibyendu Mallick1,4
1Institute of Chemistry, The Lise Meitner-Minerva Center for Computational Quantum Chemistry, Hebrew University of Jerusalem, Givat Ram Campus, Jerusalem, 91904, Israel.
We developed the TITAN code to generate and analyze electric fields in biological systems. Applying external fields to cytochrome P450 OleTJE modified its hydrogen transfer reaction, showing protein matrix catalysis and external field impact.
Area of Science:
- Computational chemistry
- Biophysics
- Biochemistry
Background:
- Understanding electric fields in biological systems is crucial for deciphering molecular mechanisms.
- Quantifying local electric fields and simulating external field effects aids in studying enzymatic reactions.
Purpose of the Study:
- To introduce the elecTric fIeld generaTion And maNipulation (TITAN) code for generating and analyzing electric fields.
- To investigate the influence of local and external electric fields on enzymatic reactions, specifically hydrogen transfer in cytochrome P450 OleTJE.
Main Methods:
- Development of the versatile TITAN computational code based on Coulomb's Law.
- Coupling TITAN with standard computational chemistry software for quantum mechanics (QM), molecular mechanics (MM), QM/MM, and molecular dynamics.
- Application of TITAN to study hydrogen transfer in cytochrome P450 OleTJE, including simulations with oriented external electric fields.
Main Results:
- The TITAN code successfully generates diverse external electric fields and quantifies local electric fields in biological systems.
- The protein matrix of P450 OleTJE exhibits moderate catalytic activity in hydrogen transfer.
- An oriented external electric field applied along the Fe─O bond of compound I significantly impacted the reaction barrier, correlating with spin density changes.
Conclusions:
- The TITAN code provides a powerful tool for simulating electric field effects in biological contexts.
- External electric fields can modulate enzymatic activity, offering potential for controlling biochemical processes.
- The study highlights the interplay between protein environment, local electric fields, and external field manipulations in enzymatic catalysis.
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