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Mass Spectrometry-Guided Genome Mining as a Tool to Uncover Novel Natural Products
Published on: March 12, 2020
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Leveraging a large microbial strain collection for natural product discovery
Andrew D Steele1, Christiana N Teijaro1, Dong Yang1,2
1Department of Chemistry, The Scripps Research Institute, Jupiter, Florida 33458.
The Journal of Biological Chemistry
|October 2, 2019
Summary
Exploring microbial strain collections unlocks vast natural product discovery potential. New methods reveal novel compounds and activities, expanding options for medicine and biology.
Area of Science:
- Microbiology
- Natural Product Chemistry
- Drug Discovery
Background:
- Natural products are vital for novel chemistry, drug leads, and biological tools.
- Microbial genome sequencing reveals many uncharacterized biosynthetic gene clusters, indicating untapped potential.
- Current natural product discovery doesn't fully represent microbial biosynthetic capabilities.
Purpose of the Study:
- To report on an expanded microbial strain collection at The Scripps Research Institute.
- To present structure-centric and function-centric approaches for natural product discovery.
- To address challenges and opportunities in leveraging large microbial collections.
Main Methods:
- Utilizing advanced genome sequencing, bioinformatics, and high-throughput screening.
- Employing complementary structure-centric and function-centric discovery strategies.
- Leveraging a large and diverse microbial strain collection.
Main Results:
- Discovery of alternative producers for known natural products with improved characteristics.
- Identification of novel analogs of privileged scaffolds.
- Uncovering novel natural products and new biological activities of known and novel compounds.
Conclusions:
- Expanded microbial strain collections are crucial for natural product discovery.
- Integrated approaches enhance the identification of novel molecules and activities.
- This resource facilitates the discovery of new natural products for diverse applications.
Keywords:
bioinformaticsbiosynthesisdrug screeningfunction-centric approachesgenome mininghigh-throughput screening (HTS)microbial strain collectionnatural productstrain prioritizationstructure-centric
