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Insights into Amyotrophic Lateral Sclerosis from a Machine Learning Perspective.

Jonathan Gordon1, Boaz Lerner2

  • 1Industrial Engineering & Management Department, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel. boaz@ee.bgu.ac.

Journal of Clinical Medicine
|October 5, 2019
PubMed
Summary

Ordinal classification improves prediction of amyotrophic lateral sclerosis (ALS) progression by accounting for error severity and modeling individual patient functionalities. This approach identifies key variables for a better understanding of ALS mechanisms.

Keywords:
ALSALS functional rating scale (ALSFRS)Bayesian networksPRO-ACT databasedisease progressiondisease statefeature selectionmachine learningordinal classification

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Area of Science:

  • Neurology
  • Biostatistics
  • Data Science

Background:

  • Amyotrophic lateral sclerosis (ALS) prediction models often assume linear progression and use accuracy metrics that don't account for error severity.
  • Existing models typically assess overall patient functionality, potentially missing nuances in disease progression across different abilities.

Purpose of the Study:

  • To develop and validate an ordinal classification approach for ALS disease state prediction that accounts for varying error severity.
  • To identify influential demographic, clinical, and laboratory variables for predicting ALS progression.
  • To model individual patient functionalities (e.g., walking, speaking) separately to understand disease impact on specific functions.

Main Methods:

  • Utilized data from 3772 patients in the Pooled Resource Open-Access ALS Clinical Trials (PRO-ACT) database.
  • Trained ordinal classifiers to predict ALS disease state, differentiating between prediction errors of varying severity.
  • Employed feature-selection and Bayesian network classifiers to identify key predictive variables and their interrelations with disease state and individual functionalities.

Main Results:

  • Ordinal classifiers demonstrated superior performance compared to conventional classifiers lacking error severity consideration.
  • Identified specific clinical and laboratory variables significantly influencing the prediction of different ALS patient functionalities.
  • Revealed distinct variable value combinations associated with mild versus severe disease deterioration.

Conclusions:

  • Ordinal classification offers a more accurate and informative method for predicting ALS disease state than traditional approaches.
  • The identified influential variables and their interrelations provide insights into the underlying mechanisms of ALS progression.
  • Separate modeling of patient functionalities allows for a granular understanding of how specific variables relate to distinct aspects of the disease.