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Updated: Jan 6, 2026

Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids
Published on: May 27, 2020
Compatible observable decompositions for coarse-grained representations of real molecular systems
Thomas Dannenhoffer-Lafage1, Jacob W Wagner1, Aleksander E P Durumeric1
1Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois 60637, USA.
This study introduces new methods, MS-CODE and RE-CODE, to derive coarse-grained (CG) observable expressions from fine-grained (FG) systems. These techniques enable systematic improvement and accurate calculation of CG properties like pressure and energy.
Area of Science:
- Computational chemistry
- Multiscale modeling
- Statistical mechanics
Background:
- Coarse-grained (CG) observable expressions often differ from their fine-grained (FG) counterparts, posing a representability challenge.
- Existing methods lack clear procedures for deriving CG observables from numerical FG simulations.
- The mathematical representability problem in CG modeling requires practical solutions for observable determination.
Purpose of the Study:
- To propose novel methods for determining CG observable expressions from FG systems.
- To develop systematically improvable and compatible CG observables.
- To address the bottom-up coarse-graining of real FG systems efficiently.
Main Methods:
- Introducing minimization targets for CG observables.
- Developing multiscale compatible observable decomposition (MS-CODE) and relative entropy compatible observable decomposition (RE-CODE).
- Utilizing local, data-efficient decomposition of observable contributions with new basis sets and one-body terms.
Main Results:
- Demonstrated the application of MS-CODE and RE-CODE to CG models of methanol and acetonitrile.
- Successfully calculated pressure for methanol models and potential energy for methanol and acetonitrile models.
- Showcased the compatibility and systematic improvable nature of the derived CG observables.
Conclusions:
- MS-CODE and RE-CODE provide effective bottom-up approaches for deriving CG observable expressions.
- The proposed methods offer a practical solution to the representability problem in CG modeling.
- These techniques facilitate accurate and efficient multiscale simulations.
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