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Updated: Jan 6, 2026

Detection of Targetable Alterations in Non-small Cell Lung Cancer using Next-generation Sequencing
Published on: October 10, 2025
Novel molecular targets for the treatment of lung cancer
Rafael Rosell1, Niki Karachaliou2, Oscar Arrieta3
1Germans Trias i Pujol Research Institute and Hospital (IGTP), Badalona, Spain.
Purpose Of Review:
The mutational landscape in lung adenocarcinoma (LADC) is broadly recognized, particularly regarding the presence of the epidermal growth factor receptor (EGFR) mutation in non-smokers. However, even in the EGFR canonical-mutant LADC, other accompanying alterations surface which may have a major impact in prognosis and open possibilities to explore new therapeutic approaches.
Recent Findings:
Complex genomic rearrangements, including chromothripsis and chromoplexy, are the origin of most-known fusion oncogenes, including echinoderm microtubule-associated protein-like 4-anaplastic lymphoma kinase, Cluster of Differentiation 74-c-ros oncogene 1, and kinesin-1 heavy chain- rearranged during transfection. Quite often LADCs driven by fusion oncogenes are accompanied by SET domain containing 2 (SETD2) mutations. SETD2 mutations have been described in renal cancer and have been related to cisplatin resistance in LADCs. Suppression of the SETD2 function inhibits the signal transducer and transcription activator function and the interferon-signaling pathway, which could partially explain the lack of effectiveness of immunotherapy in LADCs driven by fusion oncogenes.
Summary:
Targeted next-generation sequencing of DNA in the tumor tissue or in the circulating plasma of LADC is becoming indispensable for the accurate classification of LADCs that can receive appropriate targeted therapy. It is unquestionable that additional techniques, like RNA sequencing or the nCounter technology, can accomplish accurate assessment of an ample array of fusion oncogenes involved in LADCs.
Insights
Lung adenocarcinoma (LADC) harbors EGFR mutations, but other genomic alterations impact prognosis. SETD2 mutations in fusion oncogene-driven LADC may affect immunotherapy response and cisplatin resistance.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- Lung adenocarcinoma (LADC) has a known mutational landscape, including EGFR mutations in non-smokers.
- Accompanying genomic alterations in EGFR-mutant LADC can significantly impact prognosis and treatment strategies.
Purpose of the Study:
- To review the impact of genomic alterations beyond EGFR mutations in LADC.
- To explore the role of SETD2 mutations in fusion oncogene-driven LADC and their implications for therapy.
Main Methods:
- Review of current literature on LADC genomics and therapeutic targets.
- Analysis of complex genomic rearrangements, including chromothripsis and chromoplexy, in LADC.
- Discussion of targeted next-generation sequencing (NGS) and RNA sequencing for fusion oncogene detection.
Main Results:
- Fusion oncogenes (e.g., ALK, NTRK, RET) often arise from complex genomic rearrangements.
- SETD2 mutations are frequently observed in fusion oncogene-driven LADC and are linked to cisplatin resistance.
- SETD2 dysfunction may impair interferon signaling, potentially explaining immunotherapy resistance in these cases.
Conclusions:
- Targeted NGS and RNA sequencing are crucial for precise LADC classification and guiding targeted therapies.
- Understanding accompanying mutations like SETD2 is vital for optimizing treatment strategies and overcoming therapeutic resistance in LADC.
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