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Assessing Cellular Target Engagement by SHP2 PTPN11 Phosphatase Inhibitors
Published on: July 17, 2020
Next-Generation Cell-Active Inhibitors of the Undrugged Oncogenic PTP4A3 Phosphatase
John S Lazo1, Isabella K Blanco2, Nikhil R Tasker2
1Departments of Pharmacology (J.S.L., I.K.B., S.R.G., D.J.H., E.R.S.) and Chemistry (J.S.L., R.L.M., K.-L.H.), University of Virginia, Charlottesville, Virginia; and Department of Chemistry (N.R.T., E.J.R., J.C.B., P.W.), University of Pittsburgh, Pittsburgh, Pennsylvania lazo@virginia.edu.
Abstract:
Oncogenic protein tyrosine phosphatases (PTPs) are overexpressed in numerous human cancers but they have been challenging pharmacological targets. The emblematic oncogenic PTP4A tyrosine phosphatase family regulates many fundamental malignant processes. 7-Imino-2-phenylthieno[3,2-c]pyridine-4,6(5H,7H)-dione (JMS-053) is a novel, potent, and selective PTP4A inhibitor but its mechanism of action has not been fully elucidated, nor has the chemotype been fully investigated. Because tyrosine phosphatases are notoriously susceptible to oxidation, we interrogated JMS-053 and three newly synthesized analogs with specific attention on the role of oxidation. JMS-053 and its three analogs were potent in vitro PTP4A3 inhibitors, but 7-imino-5-methyl-2-phenylthieno[3,2-c]pyridine-4,6(5H,7H)-dione (NRT-870-59) appeared unique among the thienopyridinediones with respect to its inhibitory specificity for PTP4A3 versus both a PTP4A3 A111S mutant and an oncogenic dual specificity tyrosine phosphatase, CDC25B. Like JMS-053, NRT-870-59 was a reversible PTP4A3 inhibitor. All of the thienopyridinediones retained cytotoxicity against human ovarian and breast cancer cells grown as pathologically relevant three-dimensional spheroids. Inhibition of cancer cell colony formation by NRT-870-59, like JMS-053, required PTP4A3 expression. JMS-053 failed to generate significant detectable reactive oxygen species in vitro or in cancer cells. Mass spectrometry results indicated no disulfide bond formation or oxidation of the catalytic Cys104 after in vitro incubation of PTP4A3 with JMS-053 or NRT-870-59. Gene expression profiling of cancer cells exposed to JMS-053 phenocopied many of the changes seen with the loss of PTP4A3 and did not indicate oxidative stress. These data demonstrate that PTP4A phosphatases can be selectively targeted with small molecules that lack prominent reactive oxygen species generation and encourage further studies of this chemotype. SIGNIFICANCE STATEMENT: Protein tyrosine phosphatases are emerging as important contributors to human cancers. We report on a new class of reversible protein phosphatase small molecule inhibitors that are cytotoxic to human ovarian and breast cancer cells, do not generate significant reactive oxygen species in vitro and in cells, and could be valuable lead molecules for future studies of PTP4A phosphatases.
Insights
New small molecules selectively inhibit oncogenic PTP4A phosphatases, showing cytotoxicity against ovarian and breast cancer cells without generating reactive oxygen species. These findings highlight a promising chemotype for future cancer therapy development.
Area of Science:
- Biochemistry and Molecular Biology
- Cancer Research
- Medicinal Chemistry
Background:
- Oncogenic protein tyrosine phosphatases (PTPs) are frequently overexpressed in human cancers, presenting significant therapeutic challenges.
- The PTP4A phosphatase family plays a crucial role in fundamental malignant processes, making it a key target for cancer drug development.
- Existing PTP inhibitors face challenges, necessitating the exploration of novel chemotypes and mechanisms of action.
Purpose of the Study:
- To elucidate the mechanism of action of the novel PTP4A inhibitor JMS-053 and investigate its chemotype, with a focus on the role of oxidation.
- To synthesize and evaluate new analogs of JMS-053 for improved specificity and efficacy against PTP4A phosphatases.
- To assess the cytotoxic effects of these inhibitors on relevant cancer cell models and determine their dependence on PTP4A expression.
Main Methods:
- Synthesis and characterization of JMS-053 analogs, including 7-imino-5-methyl-2-phenylthieno[3,2-c]pyridine-4,6(5H,7H)-dione (NRT-870-59).
- In vitro inhibition assays using PTP4A3 and its mutants, as well as CDC25B, to determine specificity.
- Cytotoxicity assays using three-dimensional spheroid cultures of human ovarian and breast cancer cells, and colony formation assays.
- Assessment of reactive oxygen species (ROS) generation using in vitro and cellular assays.
- Mass spectrometry to detect potential oxidation of the catalytic cysteine residue.
- Gene expression profiling to analyze cellular responses to inhibitor treatment.
Main Results:
- JMS-053 and its analogs demonstrated potent in vitro inhibition of PTP4A3.
- NRT-870-59 exhibited unique specificity for PTP4A3 over a PTP4A3 mutant and CDC25B, acting as a reversible inhibitor.
- All tested thienopyridinediones showed cytotoxicity against ovarian and breast cancer spheroids, with inhibition of colony formation dependent on PTP4A3 expression.
- JMS-053 and NRT-870-59 did not generate significant ROS in vitro or in cancer cells, and mass spectrometry confirmed no oxidation of PTP4A3's catalytic cysteine.
- Gene expression profiling indicated that JMS-053 treatment phenocopied PTP4A3 loss without inducing oxidative stress.
Conclusions:
- Selective small molecule inhibition of PTP4A phosphatases is achievable with the thienopyridinedione chemotype.
- These novel inhibitors are effective against ovarian and breast cancer cells and do not rely on ROS generation, suggesting a favorable safety profile.
- The findings support the further investigation of this class of reversible PTP4A inhibitors as potential lead compounds for cancer therapy.
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