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Missing MRI Pulse Sequence Synthesis Using Multi-Modal Generative Adversarial Network
Abstract:
Magnetic resonance imaging (MRI) is being increasingly utilized to assess, diagnose, and plan treatment for a variety of diseases. The ability to visualize tissue in varied contrasts in the form of MR pulse sequences in a single scan provides valuable insights to physicians, as well as enabling automated systems performing downstream analysis. However, many issues like prohibitive scan time, image corruption, different acquisition protocols, or allergies to certain contrast materials may hinder the process of acquiring multiple sequences for a patient. This poses challenges to both physicians and automated systems since complementary information provided by the missing sequences is lost. In this paper, we propose a variant of generative adversarial network (GAN) capable of leveraging redundant information contained within multiple available sequences in order to generate one or more missing sequences for a patient scan. The proposed network is designed as a multi-input, multi-output network which combines information from all the available pulse sequences and synthesizes the missing ones in a single forward pass. We demonstrate and validate our method on two brain MRI datasets each with four sequences, and show the applicability of the proposed method in simultaneously synthesizing all missing sequences in any possible scenario where either one, two, or three of the four sequences may be missing. We compare our approach with competing unimodal and multi-modal methods, and show that we outperform both quantitatively and qualitatively.
Insights
This study introduces a generative adversarial network (GAN) to create missing magnetic resonance imaging (MRI) sequences, improving diagnostic insights and automated analysis by synthesizing needed data from available scans.
Area of Science:
- Medical Imaging
- Artificial Intelligence
- Computer Vision
Background:
- Magnetic resonance imaging (MRI) is crucial for disease assessment, diagnosis, and treatment planning.
- Acquiring multiple MRI sequences provides valuable, complementary information for physicians and automated systems.
- Challenges like long scan times, image corruption, and contrast agent allergies can limit the acquisition of necessary MRI sequences.
Purpose of the Study:
- To propose a generative adversarial network (GAN) capable of synthesizing missing MRI sequences.
- To leverage redundant information from available sequences to generate missing ones.
- To address the loss of complementary information caused by incomplete MRI scans.
Main Methods:
- Developed a multi-input, multi-output generative adversarial network (GAN).
- The GAN combines information from all available MR pulse sequences.
- Synthesizes one or more missing sequences in a single forward pass.
Main Results:
- Demonstrated and validated the method on two brain MRI datasets (four sequences each).
- Successfully synthesized all missing sequences in scenarios with one, two, or three sequences missing.
- Outperformed competing unimodal and multi-modal methods quantitatively and qualitatively.
Conclusions:
- The proposed GAN effectively generates missing MRI sequences, enhancing diagnostic capabilities.
- This approach mitigates challenges associated with incomplete MRI scans, improving data utility.
- The method offers a robust solution for reconstructing missing MR imaging data, benefiting both clinical practice and automated analysis.
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