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Updated: Jan 5, 2026

Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
Published on: October 11, 2018
Multi-stage enrichment and basket trial designs with population selection
Wen Li1, Jing Zhao1, Xiaoyun Li1
1Biostatistics and Research Decision Sciences, Merck Research Laboratories, Merck & Co, Inc, Kenilworth, New Jersey.
This study introduces multi-stage clinical trial designs for refining patient populations and monitoring efficacy. It enhances efficiency in late-phase trials using biomarker enrichment and basket designs while controlling statistical errors.
Area of Science:
- Clinical trial methodology
- Biostatistics
- Pharmaceutical research
Background:
- Early-phase biomarker data in clinical trials often exhibit high variability, impacting reliability.
- Two-stage trial designs are logical for late-phase confirmatory trials, refining populations before hypothesis testing.
- Existing literature on multi-stage designs, especially for biomarker enrichment and basket designs with interim analyses, is limited.
Purpose of the Study:
- To expand on two-stage confirmatory trial designs by incorporating multiple stages for ongoing efficacy monitoring.
- To address the limited literature on multi-stage designs, specifically focusing on biomarker enrichment and basket designs.
- To provide methods for implementing interim efficacy analyses in these designs while maintaining statistical integrity.
Main Methods:
- Focuses on two popular designs: biomarker enrichment and basket designs.
- Discusses the implementation of interim efficacy analyses following population refinement.
- Explores statistical aspects including type I error control, power, and stopping probabilities.
Main Results:
- Provides a framework for conducting interim efficacy analyses in multi-stage biomarker enrichment and basket trials.
- Demonstrates methods to control Type I error rates throughout the trial.
- Evaluates the impact of these designs on statistical power and the probability of early stopping.
Conclusions:
- Multi-stage designs offer a structured approach to refining patient populations and monitoring efficacy in late-phase trials.
- The proposed methods enhance trial efficiency and statistical validity for biomarker enrichment and basket designs.
- Further research into optimizing these multi-stage designs is warranted for improved clinical trial efficiency.
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