Related Experiment Video
Updated: Jan 5, 2026

High-Resolution Neutron Spectroscopy to Study Picosecond-Nanosecond Dynamics of Proteins and Hydration Water
Published on: April 28, 2022
Nudged Elastic Band Calculations Accelerated with Gaussian Process Regression Based on Inverse Interatomic Distances
Olli-Pekka Koistinen1,2,3, Vilhjálmur Ásgeirsson2, Aki Vehtari1
1Department of Computer Science , Aalto University , 02150 Espoo , Finland.
Abstract:
Calculations of minimum energy paths for atomic rearrangements using the nudged elastic band method can be accelerated with Gaussian process regression to reduce the number of energy and atomic force evaluations needed for convergence. Problems can arise, however, when configurations with large forces due to short distance between atoms are included in the data set. Here, a significant improvement to the Gaussian process regression approach is obtained by basing the difference measure between two atomic configurations in the covariance function on the inverted interatomic distances and by adding a new early stopping criterion for the path relaxation phase. This greatly improves the performance of the method in two applications where the original formulation does not work well: a dissociative adsorption of an H2 molecule on a Cu(110) surface and a diffusion hop of an H2O molecule on an ice Ih(0001) surface. Also, the revised method works better in the previously analyzed benchmark application to rearrangement transitions of a heptamer island on a surface, requiring fewer energy and force evaluations for convergence to the minimum energy path.
Related Concept Videos
Elastic Strain Energy for Normal Stresses
If...
Elastic Strain Energy for Shearing Stresses
Gauss's Law
Relation between Poisson's ratio, Modulus of Elasticity and Modulus of Rigidity
Gauss's Law: Problem-Solving
Elasticity
The elasticity of an object can be described by a stress-strain curve, which represents the relationship between stress...

