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Updated: Jan 5, 2026

Antibiotic Efficacy Testing in an Ex vivo Model of Pseudomonas aeruginosa and Staphylococcus aureus Biofilms in the Cystic Fibrosis Lung
Published on: January 22, 2021
Microbial biofilm correlates with an increased antibiotic tolerance and poor therapeutic outcome in infective
Enea Gino Di Domenico1, Sara Giordana Rimoldi2, Ilaria Cavallo3
1Clinical Pathology and Microbiology, San Gallicano Dermatology Institute, IRCCS, Istituti Fisioterapici Ospitalieri (IFO), via Elio Chianesi, 53 00144, Rome, Italy. enea.didomenico@ifo.gov.it.
Background:
Infective endocarditis (IE) is associated with high rates of mortality. Prolonged treatments with high-dose intravenous antibiotics often fail to eradicate the infection, frequently leading to high-risk surgical intervention. By providing a mechanism of antibiotic tolerance, which escapes conventional antibiotic susceptibility profiling, microbial biofilm represents a key diagnostic and therapeutic challenge for clinicians. This study aims at assessing a rapid biofilm identification assay and a targeted antimicrobial susceptibility profile of biofilm-growing bacteria in patients with IE, which were unresponsive to antibiotic therapy.
Results:
Staphylococcus aureus was the most common isolate (50%), followed by Enterococcus faecalis (25%) and Streptococcus gallolyticus (25%). All microbial isolates were found to be capable of producing large, structured biofilms in vitro. As expected, antibiotic treatment either administered on the basis of antibiogram or chosen empirically among those considered first-line antibiotics for IE, including ceftriaxone, daptomycin, tigecycline and vancomycin, was not effective at eradicating biofilm-growing bacteria. Conversely, antimicrobial susceptibility profile of biofilm-growing bacteria indicated that teicoplanin, oxacillin and fusidic acid were most effective against S. aureus biofilm, while ampicillin was the most active against S. gallolyticus and E. faecalis biofilm, respectively.
Conclusions:
This study indicates that biofilm-producing bacteria, from surgically treated IE, display a high tolerance to antibiotics, which is undetected by conventional antibiograms. The rapid identification and antimicrobial tolerance profiling of biofilm-growing bacteria in IE can provide key information for both antimicrobial therapy and prevention strategies.
Insights
Infective endocarditis (IE) treatment fails due to antibiotic-tolerant biofilms. A new assay identifies these biofilms and guides effective antibiotic therapy, improving patient outcomes for this serious heart infection.
Area of Science:
- Cardiovascular Medicine
- Infectious Diseases
- Microbiology
Background:
- Infective endocarditis (IE) has high mortality and treatment failure rates.
- Conventional antibiotic treatments often fail due to microbial biofilms.
- Biofilms present diagnostic and therapeutic challenges in IE management.
Purpose of the Study:
- To assess a rapid biofilm identification assay for IE.
- To determine antimicrobial susceptibility profiles of biofilm-growing bacteria in IE.
- To evaluate targeted therapies for antibiotic-unresponsive IE.
Main Methods:
- Collected microbial isolates from surgically treated IE patients.
- Utilized a rapid assay for biofilm identification.
- Performed antimicrobial susceptibility profiling on biofilm-growing bacteria.
Main Results:
- Staphylococcus aureus, Enterococcus faecalis, and Streptococcus gallolyticus were common isolates.
- All isolates formed structured biofilms in vitro.
- Standard IE antibiotics (ceftriaxone, daptomycin, tigecycline, vancomycin) were ineffective against biofilms.
- Teicoplanin, oxacillin, and fusidic acid were effective against S. aureus biofilms.
- Ampicillin was effective against S. gallolyticus and E. faecalis biofilms.
Conclusions:
- Biofilm-producing bacteria in IE exhibit antibiotic tolerance missed by conventional antibiograms.
- Rapid biofilm identification and susceptibility profiling are crucial for IE therapy.
- This approach can inform antimicrobial strategies and prevention for IE.
Related Concept Videos
Biofilms
Endocarditis I: Introduction
Endocarditis III: Medical Management
Endocarditis II: Clinical Features of Infective Endocarditis
Endocarditis IV: Nursing Management
Development of Antibiotic Resistance

