Related Experiment Video
Updated: Jan 5, 2026
Isolation and Transcriptome Analysis of Plant Cell Types
Published on: April 7, 2023
Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)
Eric J Carpenter1, Naim Matasci2, Saravanaraj Ayyampalayam3
1Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Background:
The 1000 Plant transcriptomes initiative (1KP) explored genetic diversity by sequencing RNA from 1,342 samples representing 1,173 species of green plants (Viridiplantae).
Findings:
This data release accompanies the initiative's final/capstone publication on a set of 3 analyses inferring species trees, whole genome duplications, and gene family expansions. These and previous analyses are based on de novo transcriptome assemblies and related gene predictions. Here, we assess their data and assembly qualities and explain how we detected potential contaminations.
Conclusions:
These data will be useful to plant and/or evolutionary scientists with interests in particular gene families, either across the green plant tree of life or in more focused lineages.
