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Wholemount Immunohistochemistry for Revealing Complex Brain Topography
Published on: April 5, 2012
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Click histochemistry for whole-mount staining of brain structures
Alexander A Lazutkin1,2,3, Sergey A Shuvaev2, Natalia V Barykina1,2
1P.K. Anokhin Institute of Normal Physiology, 8 Baltiyskaya Str., 125315, Moscow, Russia.
Methodsx
|November 1, 2019
Summary
Researchers developed a new click chemistry method to label dividing cells in whole brain structures. This technique allows for 3D visualization of cell proliferation and fate in neurogenesis studies.
Area of Science:
- Neuroscience
- Cell Biology
- Histochemistry
Background:
- Labeling replicating DNA with thymidine analogs marks dividing cells but is limited to histological sections.
- Current 3D tissue visualization methods necessitate detecting dividing cells within entire organs.
Purpose of the Study:
- To describe a novel method for labeling and detecting dividing cells in whole brain structures using 5-ethynyl-2'-deoxyuridine (EdU).
- To enable 3D visualization of cell proliferation and fate in neurogenesis studies within intact tissues.
Main Methods:
- Utilized 5-ethynyl-2'-deoxyuridine (EdU) for labeling DNA replication in dividing cells.
- Employed Copper(I)-catalyzed [3+2] cycloaddition (click reaction) for EdU detection in whole-mount tissues.
- Applied the method to whole brain structures, including the hippocampus, for 3D visualization.
Main Results:
- Developed a whole-mount click histochemistry technique for staining brain structures and other tissues.
- Successfully visualized dividing cells in 3D within whole brain preparations.
- Demonstrated high staining specificity, signal intensity, and low background in mouse brain tissue.
Conclusions:
- The new click histochemistry method facilitates whole-mount staining and 3D visualization of dividing cells.
- This technique is valuable for neurogenesis studies, including birthdating progenitors and tracking cell progeny.
- The method offers a robust approach for analyzing cell proliferation, survival, migration, differentiation, and fate in various tissues.

