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Related Concept Videos

Genomics02:02

Genomics

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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.

James J Davis1,2, Alice R Wattam2,3, Ramy K Aziz4,5

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This summary is machine-generated.

The PathoSystems Resource Integration Center (PATRIC) now offers enhanced bioinformatics tools for bacterial pathogens. Updates include new web-based comparative analyses and a command-line interface for easier data access and analysis.

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Area of Science:

  • Bioinformatics
  • Genomics
  • Microbial Pathogenesis

Background:

  • The PathoSystems Resource Integration Center (PATRIC) is a key bioinformatics resource for bacterial research.
  • PATRIC provides access to over 250,000 bacterial genomes with curated metadata.
  • There is a growing demand for accessible bioinformatics tools due to the rise in omics research.

Purpose of the Study:

  • To report recent updates and improvements to the PATRIC resource.
  • To enhance the utility of PATRIC for analyzing bacterial pathogens and other bacteria.
  • To support the increasing need for user-friendly bioinformatics services.

Main Methods:

  • Development of new web-based comparative analysis tools.
  • Introduction of eight new streamlined bioinformatics services.
  • Release of a command-line interface for bulk data analysis and querying.

Main Results:

  • PATRIC now offers expanded web-based visualization and comparative analysis capabilities.
  • Eight new services have been integrated to simplify complex bioinformatic workflows.
  • A command-line interface is now available for efficient data access and analysis.

Conclusions:

  • The recent updates significantly enhance PATRIC's capabilities for bacterial genomics and bioinformatics.
  • These improvements aim to meet the growing demand for accessible and powerful omics analysis tools.
  • PATRIC continues to be a valuable resource for researchers studying bacterial pathogens.