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Published on: June 27, 2020
Targeting intrinsically disordered proteins involved in cancer
Patricia Santofimia-Castaño1, Bruno Rizzuti2, Yi Xia3
1Centre de Recherche en Cancérologie de Marseille (CRCM), INSERM U1068, CNRS, UMR 7258, Aix-Marseille Université and Institut Paoli-Calmettes, Parc Scientifique et Technologique de Luminy, 163 Avenue de Luminy, 13288, Marseille, France.
Abstract:
Intrinsically disordered proteins (IDPs) do not have a well-defined structure under physiological conditions, but they have key roles in cell signaling and regulation, and they are frequently related to the development of diseases, such as cancer and other malignancies. This has converted IDPs in attractive therapeutic targets; however, targeting IDPs is challenging because of their dynamic nature. In the last years, different experimental and computational approaches, as well as the combination of both, have been explored to identify molecules to target either the hot-spots or the allosteric sites of IDPs. In this review, we summarize recent developments in successful targeting of IDPs, all of which are involved in different cancer types. The strategies used to develop and design (or in one particular example, to repurpose) small molecules targeting IDPs are, in a global sense, similar to those used in well-folded proteins: (1) screening of chemically diverse or target-oriented compound libraries; or (2) study of the interfaces involved in recognition of their natural partners, and design of molecular candidates capable of binding to such binding interface. We describe the outcomes of using these approaches in targeting IDPs involved in cancer, in the view to providing insight, to target IDPs in general. In a broad sense, the designed small molecules seem to target the most hydrophobic regions of the IDPs, hampering macromolecule (DNA or protein)-IDP interactions; furthermore, in most of the molecule-IDP complexes described so far, the protein remains disordered.
Insights
Intrinsically disordered proteins (IDPs) are crucial in cell regulation and cancer. Targeting these dynamic proteins is challenging but achievable using small molecules that bind to hydrophobic regions, disrupting critical interactions.
Area of Science:
- Biochemistry and Molecular Biology
- Drug Discovery and Development
- Oncology
Background:
- Intrinsically disordered proteins (IDPs) lack stable structures but play vital roles in cellular signaling and regulation.
- Dysregulation of IDPs is implicated in various cancers, making them significant therapeutic targets.
- The inherent flexibility of IDPs presents unique challenges for drug development.
Purpose of the Study:
- To review recent advancements in targeting intrinsically disordered proteins (IDPs) for cancer therapy.
- To explore strategies for developing small molecules that can effectively target IDPs.
- To provide insights into the general principles of targeting IDPs based on cancer-related examples.
Main Methods:
- Summarizing experimental and computational approaches for identifying IDP-targeting molecules.
- Analyzing strategies for small molecule design, including library screening and interface-based design.
- Reviewing case studies of successful IDP targeting in various cancer types.
Main Results:
- Small molecules targeting IDPs have been successfully developed and repurposed for cancer treatment.
- Strategies often involve targeting hydrophobic regions within IDPs to disrupt protein-DNA or protein-protein interactions.
- In most cases, the targeted IDPs retain their disordered state after molecular binding.
Conclusions:
- Targeting IDPs, despite their dynamic nature, is a viable therapeutic strategy for cancer.
- Small molecule design approaches for IDPs share similarities with those for well-folded proteins.
- Further research into IDP targeting can yield broader therapeutic applications beyond cancer.
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