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Updated: Jan 4, 2026

Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates
Published on: May 10, 2022
SCFFBXO28-mediated self-ubiquitination of FBXO28 promotes its degradation
Lili Cai1, Liang Liu2, Lihui Li1
1Cancer Institute, Longhua Hospital, Shanghai University of Traditional Chinese Medicine, Shanghai 200032, China.
Abstract:
The F-box protein is the substrate recognition subunit of SCF (SKP1/CUL1/F-box) E3 ubiquitin ligase complex, a multicomponent RING-type E3 ligase involved in the regulation of numerous cellular processes by targeting critical regulatory proteins for ubiquitination. However, whether and how F-box proteins are regulated is largely unknown. Here we report that FBXO28, a poorly characterized F-box protein, is a novel substrate of SCF E3 ligase. Pharmaceutical or genetic inhibition of neddylation pathway that is required for the activation of SCF stabilizes FBXO28 and prolongs its half-life. Meanwhile, FBXO28 is subjected to ubiquitination and cullin1-based SCF complex promotes FBXO28 degradation. Moreover, deletion of F-box domain stabilizes FBXO28 and knockdown of endogenous FBXO28 strongly upregulates exogenous FBXO28 expression. Taken together, these data reveal that SCFFBXO28 is the E3 ligase responsible for the self-ubiquitination and proteasomal degradation of FBXO28, providing a new clue for the upstream signaling regulation for F-box proteins.
Insights
The F-box protein FBXO28 is regulated by the SCF E3 ubiquitin ligase complex. This study reveals that SCF targets FBXO28 for degradation, uncovering a novel feedback mechanism for F-box protein regulation.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- F-box proteins are key components of SCF E3 ubiquitin ligase complexes, crucial for protein degradation.
- The regulation of F-box proteins themselves remains largely uncharacterized.
- FBXO28 is a poorly understood F-box protein with potential roles in cellular processes.
Purpose of the Study:
- To investigate the regulatory mechanisms governing the F-box protein FBXO28.
- To determine if FBXO28 is a substrate for ubiquitination and degradation.
- To elucidate the role of the SCF complex in FBXO28 regulation.
Main Methods:
- Utilized pharmaceutical and genetic inhibition of the neddylation pathway.
- Assessed FBXO28 protein stability and half-life.
- Investigated FBXO28 ubiquitination and degradation mediated by the SCF complex.
- Examined the effect of F-box domain deletion and FBXO28 knockdown on protein expression.
Main Results:
- Inhibition of neddylation stabilizes FBXO28, increasing its half-life.
- The cullin1-based SCF complex promotes FBXO28 ubiquitination and degradation.
- Deletion of the F-box domain stabilizes FBXO28.
- Knockdown of endogenous FBXO28 leads to upregulation of exogenous FBXO28 expression.
Conclusions:
- SCFFBXO28 acts as an E3 ligase for the self-ubiquitination and proteasomal degradation of FBXO28.
- This finding provides new insights into the upstream signaling pathways regulating F-box proteins.
- Establishes a novel feedback loop for controlling F-box protein levels and function.
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