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Biased hypermutation and other genetic changes in defective measles viruses in human brain infections
R Cattaneo1, A Schmid, D Eschle
1Institute for Molecular Biology I, University of Zürich, Switzerland.
Abstract:
We assessed the alterations of viral gene expression occurring during persistent infections by cloning full-length transcripts of measles virus (MV) genes from brain autopsies of two subacute sclerosing panencephalitis patients and one measles inclusion body encephalitis (MIBE) patient. the sequence of these MV genes revealed that, most likely, almost 2% of the nucleotides were mutated during persistence, and 35% of these differences resulted in amino acid changes. One of these nucleotide substitutions and one deletion resulted in alteration of the reading frames of two fusion genes, as confirmed by in vitro translation of synthetic mRNAs. One cluster of mutations was exceptional; in the matrix gene of the MIBE case, 50% of the U residues were changed to C, which might result from a highly biased copying event exclusively affecting this gene. We propose that the cluster of mutations in the MIBE case, and other combinations of mutations in other cases, favored propagation of MV infections in brain cells by conferring a selective advantage to the mutated genomes.
Insights
Persistent measles virus (MV) infections in the brain show significant mutations. These genetic changes, particularly in the matrix gene, may enhance viral propagation in brain cells.
Area of Science:
- Virology
- Neuroscience
- Genetics
Background:
- Subacute sclerosing panencephalitis (SSPE) and measles inclusion body encephalitis (MIBE) are severe neurological complications of persistent measles virus (MV) infection.
- Understanding the genetic alterations of MV during these chronic infections is crucial for elucidating disease pathogenesis.
Purpose of the Study:
- To investigate the mutational landscape of MV genes in persistent infections.
- To determine if observed mutations confer a selective advantage for viral propagation in the central nervous system.
Main Methods:
- Cloning of full-length MV gene transcripts from brain autopsies of SSPE and MIBE patients.
- DNA sequencing to identify nucleotide mutations and their impact on amino acid sequences.
- In vitro translation assays to confirm alterations in gene reading frames.
Main Results:
- Approximately 2% of MV nucleotides were mutated during persistent infection, with 35% affecting amino acid sequences.
- Mutations altered reading frames in two fusion genes, confirmed by in vitro translation.
- A distinct mutation cluster in the MIBE matrix gene showed 50% U-to-C substitutions, suggesting a biased copying event.
Conclusions:
- Accumulated mutations in persistent MV infections, especially within brain tissue, can lead to significant genetic divergence.
- Specific mutation patterns, like the MIBE matrix gene alteration, may represent adaptive changes favoring viral persistence and propagation in the brain.
- These findings suggest a role for viral genetic evolution in the pathogenesis of severe MV-associated neurological diseases.
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