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Updated: Sep 12, 2026

Soil Lysimeter Excavation for Coupled Hydrological, Geochemical, and Microbiological Investigations
Published on: September 11, 2016
Hydrogeochemical and microbiological effects of simulated recharge and drying within a 2D meso-scale aquifer
Julia Regnery1, Dong Li2, Jonghyun Lee3
1Dept. of Civil and Environmental Engineering, Colorado School of Mines, 1500 Illinois Street, Golden, CO 80401, USA; Dept. of Ecotoxicology and Biochemistry, Federal Institute of Hydrology, Am Mainzer Tor 1, 56068 Koblenz, Germany.
Abstract:
Oscillating cycles of dewatering (termed drying) and rewetting during managed aquifer recharge (MAR) are used to maintain infiltration rates and could also exert an influence on subsurface microbial structure and respiratory processes. Despite this practice, little knowledge is available about changes to microbial community structure and trace organic chemical biodegradation potential in MAR systems under these conditions. A biologically active two-dimensional (2D) synthetic MAR system equipped with automated sensors (temperature, water pressure, conductivity, soil moisture, oxidation-reduction potential) and embedded water and soil sampling ports was used to test and model these important subsurface processes at the meso-scale. The fate and transport of the antiepileptic drug carbamazepine, the antibiotics sulfamethoxazole and trimethoprim, and the flame retardant tris (2-chloroethyl) phosphate were simulated using the finite element analysis model, FEFLOW. All of these compounds exhibit moderate to poor biodegradability in MAR systems. Within the operational MAR scenario tested, three episodic drying cycles spanning between 18 and 24 days were conducted over a period of 184 days. Notably, cessation of flow and partial dewatering of the 2D synthetic aquifer during dry cycles caused no measurable decrease in soil moisture content beyond the near-surface layer. The episodic flow introduction and dewatering cycles in turn had little impact on overall trace organic chemical biotransformation behavior and soil microbial community structure. However, spatial differences in oxidation-reduction potential and soil moisture were both identified as significant environmental predictors for microbial community structure in the 2D synthetic aquifer.
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