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Supervised machine learning for diagnostic classification from large-scale neuroimaging datasets.

Pradyumna Lanka1,2, D Rangaprakash1,3, Michael N Dretsch4,5,6

  • 1AU MRI Research Center, Department of Electrical and Computer Engineering, Auburn University, 560 Devall Dr., Suite 266D, Auburn, AL, 36849, USA.

Brain Imaging and Behavior
|November 7, 2019
PubMed
Summary
This summary is machine-generated.

Machine learning classifiers in neuroimaging often overfit heterogeneous data. A consensus classifier improved generalizability across diverse patient populations for Autism Spectrum Disorder, ADHD, PTSD, and Alzheimer's disease.

Keywords:
ADHDAlzheimer’s diseaseAutismDiagnostic classificationFunctional connectivityPTSDResting-state functional MRISupervised machine learning

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Area of Science:

  • Neuroimaging
  • Machine Learning
  • Computational Psychiatry

Background:

  • Generalizability of machine learning classifiers in neuroimaging is a significant concern.
  • Evaluating classifier performance across diverse populations and varying data acquisition parameters is crucial.

Purpose of the Study:

  • To assess the generalizability of 18 machine learning classifiers across heterogeneous neuroimaging datasets for four neurological disorders.
  • To investigate the impact of age range and acquisition site differences on classifier performance.
  • To propose and evaluate a consensus-classifier approach to improve generalizability.

Main Methods:

  • Applied 18 diverse machine learning classifiers to datasets from Autism Spectrum Disorder (N=988), ADHD (N=930), PTSD (N=87), and Alzheimer's disease (N=132).
  • Training, validation, and testing data were matched by diagnosis but varied in age or acquisition site.
  • A consensus-classifier was developed by combining predictions from all individual classifiers.

Main Results:

  • Overfitting was identified as a major issue in heterogeneous datasets, particularly with smaller sample sizes, leading to overestimated accuracy.
  • Individual classifiers showed variable performance across different datasets.
  • The consensus-classifier demonstrated reduced sensitivity to discrepancies between training/validation and hold-out test data.
  • Identified robust functional connectivity patterns with diagnostic predictive ability, independent of classification algorithm, age, or site.

Conclusions:

  • The generalizability of neuroimaging classifiers is challenged by data heterogeneity and overfitting.
  • A consensus-classifier approach enhances robustness and generalizability in clinical neuroimaging applications.
  • Functional connectivity patterns identified through this method hold significant diagnostic potential across diverse populations.