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Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration
Published on: January 9, 2020
Genome Wide Meta-Analysis identifies common genetic signatures shared by heart function and Alzheimer's disease
M E Sáez1, A González-Pérez1, B Hernández-Olasagarre2
1Andalusian Bioinformatics Research Centre (CAEBi), Seville, Spain.
Genetic variants in apoptotic genes are linked to heart function measured by echocardiography. This research also uncovers a surprising genetic connection between heart health and later-life cognitive decline, potentially aiding Alzheimer's disease prevention.
Area of Science:
- Genetics
- Cardiology
- Neuroscience
Background:
- Echocardiography is crucial for assessing heart function and monitoring cardiac diseases.
- Previous research identified genetic factors influencing echocardiographic measures.
- Apoptotic genes' role in heart development in experimental models suggested investigating their human cardiac function association.
Purpose of the Study:
- To investigate the association between apoptotic gene variants and echocardiographic traits in humans.
- To identify novel genetic markers related to cardiac function.
- To explore the link between apoptotic genes, cardiac function, and Alzheimer's disease.
Main Methods:
- Utilized genome-wide data from public repositories.
- Performed rigorous quality control and imputation of genetic data.
- Conducted a meta-analysis of individual association study results.
Main Results:
- Confirmed the association of caspases and other apoptosis-related genes with cardiac phenotypes.
- Enrichment analysis revealed an over-representation of genes linked to Alzheimer's disease, including apoptotic regulators.
- Genetic correlation analyses supported the novel link between cardiac function and cognitive decline.
Conclusions:
- Apoptotic gene variants are associated with echocardiographic indicators of heart function.
- A potential genetic link exists between heart function in healthy individuals and later-life cognitive decline.
- Findings may inform preventative strategies for Alzheimer's disease.
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