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Preparation of Nucleosome Core Particles Complexed with DNA Repair Factors for Cryo-Electron Microscopy Structural Determination
Published on: August 17, 2022
Nitrogen Mustard Induces Formation of DNA-Histone Cross-Links in Nucleosome Core Particles
Mengdi Shang1, Mengtian Ren1, Chuanzheng Zhou1
1State Key Laboratory of Elemento-Organic Chemistry and Department of Chemical Biology, College of Chemistry , Nankai University , Tianjin 300071 , China.
Abstract:
Nitrogen mustards have long been used in cancer chemotherapy, and their cytotoxicity has traditionally been attributed to the formation of DNA interstrand cross-links and DNA monoalkylation. Recent studies have shown that exposure to nitrogen mustards also induces the formation of DNA-protein cross-links (DPCs) via bridging between N7 of a deoxyguanosine residue in the DNA and the side chain of a Cys residue in the protein. However, the formation of nitrogen mustard-induced DNA-histone cross-links has never been observed. Herein, we demonstrate that treating reconstituted nucleosome core particles (NCPs) with the nitrogen mustard mechlorethamine results in the formation of DNA-histone cross-links in addition to DNA monoalkylation and interstrand cross-link formation. The yields of these three types of DNA lesions in the NCPs decreased in the following order: DNA monoalkylation ≫ DNA interstrand cross-links > DNA-histone cross-links. Mechanistic studies involving tailless histones and competitive inhibition by a polyamine demonstrated that Lys residues in the N- and C-terminal tails of the histones were the predominant sites involved in DNA-histone cross-link formation. Given that NCPs are the fundamental repeating units of chromatin in eukaryotes, our findings suggest that nitrogen mustard-induced formation of DNA-histone cross-links may occur in living cells and that DPC formation may contribute to the cytotoxicity of nitrogen mustards.
Insights
Nitrogen mustards, used in cancer therapy, form DNA-histone cross-links, a novel finding that may explain their cell-killing effects. These DNA-protein cross-links (DPCs) are a new target for understanding chemotherapy mechanisms.
Area of Science:
- Biochemistry
- Molecular Biology
- Cancer Research
Background:
- Nitrogen mustards are chemotherapy agents whose toxicity is linked to DNA damage.
- DNA-protein cross-links (DPCs) are formed by nitrogen mustards, but DNA-histone cross-links were unobserved.
- Nucleosome core particles (NCPs) are the basic units of chromatin.
Purpose of the Study:
- To investigate the formation of DNA-histone cross-links induced by nitrogen mustards.
- To determine the relative yields of different DNA lesions caused by nitrogen mustards in NCPs.
- To identify the specific sites of DNA-histone cross-linking.
Main Methods:
- Treatment of reconstituted nucleosome core particles (NCPs) with mechlorethamine.
- Quantification of DNA monoalkylation, DNA interstrand cross-links, and DNA-histone cross-links.
- Mechanistic studies using tailless histones and competitive inhibition assays.
Main Results:
- Mechlorethamine induced DNA-histone cross-links in NCPs, alongside DNA monoalkylation and interstrand cross-links.
- The yields of DNA lesions decreased in the order: DNA monoalkylation ≫ DNA interstrand cross-links > DNA-histone cross-links.
- Lysine residues in histone N- and C-terminal tails were the primary sites for DNA-histone cross-link formation.
Conclusions:
- Nitrogen mustard-induced DNA-histone cross-links can form in NCPs, suggesting potential occurrence in vivo.
- The formation of DNA-protein cross-links, including DNA-histone cross-links, may contribute to nitrogen mustard cytotoxicity.
- This study reveals a new mechanism for DNA damage by nitrogen mustards in the context of chromatin structure.
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