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Updated: Jan 3, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Rare Genetic Variants Associated With Sudden Cardiac Death in Adults
Amit V Khera1, Heather Mason-Suares2, Deanna Brockman3
1Center for Genomic Medicine, Massachusetts General Hospital, Boston, Massachusetts; Cardiology Division, Massachusetts General Hospital, Boston, Massachusetts; Cardiovascular Disease Initiative, Broad Institute of MIT and Harvard, Cambridge, Massachusetts.
Insights
Rare genetic variants are linked to sudden cardiac death in adults. Approximately 1% of asymptomatic individuals carry these potentially dangerous variants, highlighting the importance of genetic screening.
Area of Science:
- Cardiovascular Genetics
- Genomics
- Sudden Cardiac Death Etiology
Background:
- Sudden cardiac death (SCD) affects numerous U.S. adults annually, often without prior symptoms or diagnosis.
- Rare pathogenic DNA variants in specific genes predispose individuals to SCD causes like cardiomyopathy and inherited arrhythmias.
Purpose of the Study:
- To determine the prevalence of rare pathogenic variants in SCD cases versus controls.
- To assess the prevalence and clinical significance of these mutations in asymptomatic adults.
Main Methods:
- Whole-exome sequencing was performed on 600 SCD cases and 600 matched controls.
- Whole-genome sequencing was used in 4,525 asymptomatic adults to evaluate variant prevalence and cardiovascular death risk.
Main Results:
- 14 pathogenic/likely pathogenic variants were identified in 15 SCD cases (2.5%), but none in controls (p < 0.0001).
- In asymptomatic adults, 0.9% carried such variants, associated with a 3.24-fold increased risk of cardiovascular death (p=0.02).
Conclusions:
- Gene sequencing reveals pathogenic variants in a small subset of SCD adults.
- These variants are found in approximately 1% of asymptomatic adults, indicating potential clinical importance.
Background:
Sudden cardiac death occurs in ∼220,000 U.S. adults annually, the majority of whom have no prior symptoms or cardiovascular diagnosis. Rare pathogenic DNA variants in any of 49 genes can pre-dispose to 4 important causes of sudden cardiac death: cardiomyopathy, coronary artery disease, inherited arrhythmia syndrome, and aortopathy or aortic dissection.
Objectives:
This study assessed the prevalence of rare pathogenic variants in sudden cardiac death cases versus controls, and the prevalence and clinical importance of such mutations in an asymptomatic adult population.
Methods:
The authors performed whole-exome sequencing in a case-control cohort of 600 adult-onset sudden cardiac death cases and 600 matched controls from 106,098 participants of 6 prospective cohort studies. Observed DNA sequence variants in any of 49 genes with known association to cardiovascular disease were classified as pathogenic or likely pathogenic by a clinical laboratory geneticist blinded to case status. In an independent population of 4,525 asymptomatic adult participants of a prospective cohort study, the authors performed whole-genome sequencing and determined the prevalence of pathogenic or likely pathogenic variants and prospective association with cardiovascular death.
Results:
Among the 1,200 sudden cardiac death cases and controls, the authors identified 5,178 genetic variants and classified 14 as pathogenic or likely pathogenic. These 14 variants were present in 15 individuals, all of whom had experienced sudden cardiac death-corresponding to a pathogenic variant prevalence of 2.5% in cases and 0% in controls (p < 0.0001). Among the 4,525 participants of the prospective cohort study, 41 (0.9%) carried a pathogenic or likely pathogenic variant and these individuals had 3.24-fold higher risk of cardiovascular death over a median follow-up of 14.3 years (p = 0.02).
Conclusions:
Gene sequencing identifies a pathogenic or likely pathogenic variant in a small but potentially important subset of adults experiencing sudden cardiac death; these variants are present in ∼1% of asymptomatic adults.
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