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Application of Deep Learning-Based Medical Image Segmentation via Orbital Computed Tomography
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Data augmentation using generative adversarial networks (CycleGAN) to improve generalizability in CT segmentation

Veit Sandfort1, Ke Yan1, Perry J Pickhardt2

  • 1Imaging Biomarkers and Computer-Aided Diagnosis Laboratory, Radiology and Imaging Sciences, National Institutes of Health Clinical Center, Building 10 Room 1C224D MSC 1182, Bethesda, MD, 20892-1182, USA.

Scientific Reports
|November 16, 2019
PubMed
Summary

Generative adversarial networks, specifically CycleGAN, significantly improve computed tomography (CT) segmentation performance on unseen non-contrast data. This novel data augmentation reduces manual segmentation costs and effort for medical imaging researchers.

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Area of Science:

  • Medical Imaging
  • Artificial Intelligence
  • Computer Vision

Background:

  • Labeled medical imaging data is scarce and costly, hindering the development of generalizable deep learning models.
  • Data augmentation is crucial for improving model generalizability, with generative adversarial networks (GANs) offering a novel approach.

Purpose of the Study:

  • To evaluate the effectiveness of CycleGAN for data augmentation in computed tomography (CT) segmentation tasks.
  • To assess the impact of CycleGAN-generated synthetic non-contrast CT images on segmentation performance, particularly on out-of-distribution data.

Main Methods:

  • Trained a CycleGAN to translate contrast-enhanced CT images into non-contrast CT images.
  • Augmented a training dataset with synthetic non-contrast images generated by CycleGAN.
  • Compared the segmentation performance of U-Net models trained on original versus augmented datasets using in-distribution (contrast CT) and out-of-distribution (non-contrast CT) datasets.

Main Results:

  • CycleGAN augmentation significantly improved segmentation performance on out-of-distribution non-contrast CT data, notably for kidney segmentation (Dice score increased from 0.09 to 0.66).
  • Improvements were also observed for liver (0.86 to 0.89) and spleen (0.65 to 0.69) segmentation.
  • The method demonstrated enhanced generalizability of deep learning models to unseen CT imaging data.

Conclusions:

  • CycleGAN is a valuable tool for data augmentation in CT segmentation, effectively improving model performance on out-of-distribution datasets.
  • This approach can reduce the need for extensive manual segmentation, lowering costs and effort in medical imaging research.
  • The findings suggest broader applicability of GAN-based augmentation for enhancing deep learning in medical imaging.