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Related Concept Videos

RNA-seq03:21

RNA-seq

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
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Ribosome Profiling02:24

Ribosome Profiling

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Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
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Related Experiment Video

Updated: Jan 3, 2026

Rup (RNA-seq Usability Assessment Pipeline) - Quality Control for Bulk RNA-seq Experiments in Eukaryotes
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Rup (RNA-seq Usability Assessment Pipeline) - Quality Control for Bulk RNA-seq Experiments in Eukaryotes

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RaNA-Seq: Interactive RNA-Seq analysis from FASTQ files to functional analysis.

Carlos Prieto1, David Barrios1

  • 1Bioinformatics Service, Nucleus, University of Salamanca, Plaza Doctores de la Reina, Salamanca, Spain.

Bioinformatics (Oxford, England)
|November 16, 2019
PubMed
Summary
This summary is machine-generated.

RaNA-Seq is a cloud platform that rapidly analyzes RNA sequencing (RNA-Seq) data. It offers a full analysis pipeline with interactive visualizations, enabling quick interpretation and publication of results.

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Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomics

Background:

  • RNA sequencing (RNA-Seq) data analysis can be complex and time-consuming.
  • There is a need for accessible and efficient tools for RNA-Seq data interpretation.

Purpose of the Study:

  • To introduce RaNA-Seq, a novel cloud-based platform for rapid RNA-Seq data analysis and visualization.
  • To provide researchers with an intuitive and efficient tool for comprehensive RNA-Seq data interpretation.

Main Methods:

  • The RaNA-Seq platform quantifies FASTQ files.
  • It calculates quality control metrics and performs differential expression analysis.
  • Functional analyses are integrated for result interpretation.

Main Results:

  • RaNA-Seq completes a full RNA-Seq analysis in minutes.
  • The platform utilizes generally accepted and reproducible protocols.
  • Analysis results are presented as interactive graphics and reports.

Conclusions:

  • RaNA-Seq offers a rapid and user-friendly solution for RNA-Seq data analysis.
  • The platform's interactive outputs facilitate interpretation and publication.
  • RaNA-Seq is accessible online at https://ranaseq.eu.