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Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
Prediction of Breast Cancer from Imbalance Respect Using Cluster-Based Undersampling Method
Jue Zhang1,2, Li Chen1, Fazeel Abid1
1School of Information Science and Technology, Northwest University, Xi'an 710127, China.
A new K-means and Boosted C5.0 hybrid method effectively addresses imbalanced breast cancer data. This machine learning approach improves diagnostic accuracy by balancing data classes for better classification performance.
Area of Science:
- Medical Informatics
- Machine Learning
- Data Science
Background:
- Class imbalance is a significant challenge in breast cancer diagnosis, potentially leading to biased classification models.
- Existing machine learning methods struggle to accurately identify minority class instances in imbalanced datasets.
Purpose of the Study:
- To propose a novel hybrid classification method, K-Boosted C5.0, for addressing two-class imbalanced problems in breast cancer diagnosis.
- To enhance classification performance by leveraging undersampling techniques guided by K-means clustering.
Main Methods:
- A hybrid approach combining K-means clustering for informative sample selection and Boosted C5.0 as the classifier.
- K-means algorithm clusters majority and minority instances, selecting a balanced number of samples near class boundaries.
- Boosted C5.0 classifier is trained on the undersampled dataset to improve predictive accuracy.
Main Results:
- The K-Boosted C5.0 hybrid method demonstrated superior performance on 14 diverse datasets (12 small-scale, 2 large-scale).
- Evaluated using Matthews' correlation coefficient (MCC) and accuracy, the proposed method outperformed several competitive algorithms.
- Instance selection via clustering enhanced training data diversity, contributing to improved classification outcomes.
Conclusions:
- The K-Boosted C5.0 hybrid method offers a robust solution for imbalanced breast cancer datasets.
- This approach presents a promising alternative to conventional machine learning techniques for improved diagnostic accuracy.
- The method's effectiveness in handling class imbalance suggests broader applicability in similar biomedical classification tasks.
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