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Generation and Assembly of Virus-Specific Nucleocapsids of the Respiratory Syncytial Virus
Published on: July 27, 2021
The C Protein Is Recruited to Measles Virus Ribonucleocapsids by the Phosphoprotein
Christian K Pfaller1,2, Louis-Marie Bloyet3, Ryan C Donohue4,5
1Department of Molecular Medicine, Mayo Clinic, Rochester, Minnesota, USA Christian.Pfaller@pei.de Cattaneo.Roberto@mayo.edu.
Abstract:
Measles virus (MeV), like all viruses of the order Mononegavirales, utilizes a complex consisting of genomic RNA, nucleoprotein, the RNA-dependent RNA polymerase, and a polymerase cofactor, the phosphoprotein (P), for transcription and replication. We previously showed that a recombinant MeV that does not express another viral protein, C, has severe transcription and replication deficiencies, including a steeper transcription gradient than the parental virus and generation of defective interfering RNA. This virus is attenuated in vitro and in vivo However, how the C protein operates and whether it is a component of the replication complex remained unclear. Here, we show that C associates with the ribonucleocapsid and forms a complex that can be purified by immunoprecipitation or ultracentrifugation. In the presence of detergent, the C protein is retained on purified ribonucleocapsids less efficiently than the P protein and the polymerase. The C protein is recruited to the ribonucleocapsid through its interaction with the P protein, as shown by immunofluorescence microscopy of cells expressing different combinations of viral proteins and by split luciferase complementation assays. Forty amino-terminal C protein residues are dispensable for the interaction with P, and the carboxyl-terminal half of P is sufficient for the interaction with C. Thus, the C protein, rather than being an "accessory" protein as qualified in textbooks so far, is a ribonucleocapsid-associated protein that interacts with P, thereby increasing replication accuracy and processivity of the polymerase complex.IMPORTANCE Replication of negative-strand RNA viruses relies on two components: a helical ribonucleocapsid and an RNA-dependent RNA polymerase composed of a catalytic subunit, the L protein, and a cofactor, the P protein. We show that the measles virus (MeV) C protein is an additional component of the replication complex. We provide evidence that the C protein is recruited to the ribonucleocapsid by the P protein and map the interacting segments of both C and P proteins. We conclude that the primary function of MeV C is to improve polymerase processivity and accuracy, rather than uniquely to antagonize the type I interferon response. Since most viruses of the Paramyxoviridae family express C proteins, their primary function may be conserved.
Insights
Measles virus (MeV) C protein associates with the ribonucleocapsid via the P protein. This interaction enhances viral RNA replication accuracy and processivity, revealing a conserved function for C proteins in Mononegavirales.
Area of Science:
- Virology
- Molecular Biology
- Structural Biology
Background:
- Measles virus (MeV) replication relies on a complex of genomic RNA, nucleoprotein, RNA-dependent RNA polymerase (L protein), and phosphoprotein (P).
- Previous studies showed MeV lacking the C protein exhibits severe transcription and replication defects, suggesting a crucial role for C.
- The precise function and localization of the MeV C protein within the replication machinery remained unclear.
Purpose of the Study:
- To elucidate the role of the measles virus C protein in viral RNA transcription and replication.
- To determine if the C protein is a component of the viral replication complex.
- To identify the interaction partners and domains involved in C protein's function.
Main Methods:
- Co-immunoprecipitation and ultracentrifugation to assess C protein association with the ribonucleocapsid.
- Immunofluorescence microscopy to visualize protein localization in infected cells.
- Split luciferase complementation assays to confirm protein-protein interactions.
- Analysis of recombinant viruses with specific protein deletions or mutations.
Main Results:
- The measles virus C protein associates with the viral ribonucleocapsid.
- C protein is recruited to the ribonucleocapsid through direct interaction with the P protein.
- Specific domains within C (N-terminal 40 residues dispensable) and P (C-terminal half sufficient) mediate this interaction.
- C protein enhances the accuracy and processivity of the viral polymerase complex.
Conclusions:
- The measles virus C protein is not merely an accessory protein but an integral component of the replication complex.
- C protein's primary function is to improve polymerase complex efficiency and fidelity.
- This function of C protein in enhancing RNA replication may be conserved across Paramyxoviridae family viruses.
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