Related Experiment Video
Updated: Jan 3, 2026

Combining Fluidic Devices with Microscopy and Flow Cytometry to Study Microbial Transport in Porous Media Across Spatial Scales
Published on: November 25, 2020
Confinement and activity regulate bacterial motion in porous media
Tapomoy Bhattacharjee1, Sujit S Datta
1The Andlinger Center for Energy and the Environment, Princeton University, 86 Olden Street, Princeton, NJ 08544, USA.
Bacteria in porous environments exhibit unique hopping-and-trapping motility. Hopping depends on pore size, while trapping balances pore confinement and cell activity, advancing our understanding of microbial movement.
Area of Science:
- Microbiology
- Biophysics
- Environmental Science
Background:
- Bacterial motility is crucial for various applications, including healthcare and environmental remediation.
- Escherichia coli (E. coli) typically uses run-and-tumble dynamics in homogeneous environments.
- Confined E. coli in porous media displays distinct hopping-and-trapping motility.
Purpose of the Study:
- To investigate the mechanisms governing bacterial hopping-and-trapping motility in porous media.
- To determine the influence of pore-scale confinement and cellular activity on bacterial movement.
- To validate predictions from an entropic trapping model.
Main Methods:
- Direct visualization techniques were employed to observe bacterial behavior.
- Experiments were conducted in disordered porous media with varying pore sizes.
- Cellular activity was modulated to assess its impact on motility patterns.
Main Results:
- Bacterial hopping is primarily dictated by pore-scale confinement and is independent of cellular activity.
- Bacterial trapping is influenced by the interplay between pore-scale confinement and cellular activity.
- Experimental findings align with predictions from the entropic trapping model.
Conclusions:
- Bacterial motility in porous media is regulated by a combination of physical confinement and cellular activity.
- Hopping-and-trapping motility provides new insights into microbial transport in heterogeneous environments.
- This research can inform the development of predictive models for bacterial behavior in complex settings.
Related Concept Videos
Protein Diffusion in the Membrane
Intracellular Movement of Viruses and Bacteria
Physical Methods for Controlling Microbial Growth: Radiation and Filtration

