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Updated: Jan 3, 2026

Transplantation of Human Induced Pluripotent Stem Cell-Derived Microglia in Immunocompetent Mice Brain via Non-Invasive Transnasal Route
Published on: May 31, 2022
Human iPSC-derived microglia assume a primary microglia-like state after transplantation into the neonatal mouse
Devon S Svoboda1, M Inmaculada Barrasa1,2, Jian Shu1,3
1Whitehead Institute for Biomedical Research, Cambridge, MA 02142.
Abstract:
Microglia are essential for maintenance of normal brain function, with dysregulation contributing to numerous neurological diseases. Protocols have been developed to derive microglia-like cells from human induced pluripotent stem cells (hiPSCs). However, primary microglia display major differences in morphology and gene expression when grown in culture, including down-regulation of signature microglial genes. Thus, in vitro differentiated microglia may not accurately represent resting primary microglia. To address this issue, we transplanted microglial precursors derived in vitro from hiPSCs into neonatal mouse brains and found that the cells acquired characteristic microglial morphology and gene expression signatures that closely resembled primary human microglia. Single-cell RNA-sequencing analysis of transplanted microglia showed similar cellular heterogeneity as primary human cells. Thus, hiPSCs-derived microglia transplanted into the neonatal mouse brain assume a phenotype and gene expression signature resembling that of resting microglia residing in the human brain, making chimeras a superior tool to study microglia in human disease.
Insights
Transplanting human induced pluripotent stem cell-derived microglia precursors into mouse brains created cells that closely resembled primary human microglia. This chimera model offers a superior tool for studying neurological diseases.
Area of Science:
- Neuroscience
- Stem Cell Biology
- Immunology
Background:
- Microglia are crucial for brain health, and their dysfunction is linked to neurological disorders.
- Current methods for deriving microglia-like cells from human induced pluripotent stem cells (hiPSCs) result in cells with altered morphology and gene expression compared to primary microglia.
- In vitro cultured microglia may not accurately represent the state of resting primary microglia.
Purpose of the Study:
- To develop a more accurate in vitro model of human microglia for disease research.
- To investigate whether transplanted hiPSC-derived microglia precursors can acquire a phenotype similar to primary human microglia in vivo.
Main Methods:
- Derived microglial precursors from hiPSCs.
- Transplanted these precursors into neonatal mouse brains.
- Analyzed cell morphology, gene expression, and cellular heterogeneity using single-cell RNA-sequencing.
Main Results:
- Transplanted hiPSC-derived microglia precursors adopted characteristic microglial morphology and gene expression profiles.
- The in vivo-generated microglia closely resembled primary human microglia.
- Single-cell RNA-sequencing revealed cellular heterogeneity in transplanted microglia comparable to primary human cells.
Conclusions:
- Transplantation into the neonatal mouse brain allows hiPSC-derived microglia to achieve a phenotype and gene expression signature similar to resting primary human microglia.
- This hiPSC-microglia chimera model provides a valuable tool for studying human microglia in the context of neurological diseases.
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