Related Experiment Video
Updated: Jan 3, 2026

Studying DNA Looping by Single-Molecule FRET
Published on: June 28, 2014
Unexpected entanglement dynamics in semidilute blends of supercoiled and ring DNA
Karthik R Peddireddy1, Megan Lee1, Yuecheng Zhou2
1Department of Physics and Biophysics, University of San Diego, 5998 Alcala Park, San Diego, CA 92110, USA. randerson@sandiego.edu.
Abstract:
Blends of polymers of different topologies, such as ring and supercoiled, naturally occur in biology and often exhibit emergent viscoelastic properties coveted in industry. However, due to their complexity, along with the difficulty of producing polymers of different topologies, the dynamics of topological polymer blends remains poorly understood. We address this void by using both passive and active microrheology to characterize the linear and nonlinear rheological properties of blends of relaxed circular and supercoiled DNA. We characterize the dynamics as we vary the concentration from below the overlap concentration c* to above (0.5c* to 2c*). Surprisingly, despite working at the dilute-semidilute crossover, entanglement dynamics, such as elastic plateaus and multiple relaxation modes, emerge. Finally, blends exhibit an unexpected sustained elastic response to nonlinear strains not previously observed even in well-entangled linear polymer solutions.
Related Concept Videos
DNA Topoisomerases
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
Single-Strand DNA Binding Proteins
Homologous Recombination
Lagging Strand Synthesis
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
The DNA Replication Fork
Replication in Prokaryotes
Many Proteins Work Together to Replicate the Chromosome
Replication is coordinated and carried out by a host of specialized...

