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Lysobacter terrigena sp. nov., isolated from a Korean soil sample
Weilan Li1, Nabil Salah Elderiny1, Leonid N Ten1
1School of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.
Archives of Microbiology
|November 29, 2019
Summary
A novel yellow, motile bacterium, Lysobacter terrigena 17J7-1T, was discovered in Jeju Island soil. Genetic and biochemical analyses confirm it represents a new species within the Lysobacter genus.
Area of Science:
- Microbiology
- Bacterial Taxonomy
- Genomics
Background:
- The genus Lysobacter comprises Gram-negative bacteria known for diverse metabolic capabilities and ecological roles.
- Accurate taxonomic classification of novel bacterial isolates is crucial for understanding microbial diversity and function.
Purpose of the Study:
- To characterize a novel bacterial strain, 17J7-1T, isolated from Jeju Island soil.
- To determine the phylogenetic and taxonomic position of strain 17J7-1T within the genus Lysobacter.
Main Methods:
- Phenotypic characterization including morphology, growth conditions, and biochemical tests.
- Phylogenetic analysis based on 16S rRNA gene sequencing.
- Genomic analysis including DNA G+C content, DNA-DNA hybridization (DDH), and Average Nucleotide Identity (ANI) calculations.
- Fatty acid analysis and polar lipid profiling.
Main Results:
- Strain 17J7-1T is a Gram-negative, rod-shaped, motile, yellow bacterium with optimal growth at 10–42 °C, pH 7–9, and up to 1% NaCl.
- 16S rRNA gene sequence analysis showed highest similarity to Lysobacter mobilis (97.4%).
- However, DNA-DNA relatedness (<42.3%), ANI (<77%), and dDDH (<22%) values confirmed that strain 17J7-1T is distinct from recognized Lysobacter species, including L. mobilis and the type species L. enzymogenes.
- Major fatty acids included iso-C16:0, summed feature 9, and iso-C15:0. Phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol were the dominant polar lipids.
Conclusions:
- Strain 17J7-1T represents a novel species within the genus Lysobacter.
- The proposed name for this new species is Lysobacter terrigena sp. nov.
- The type strain is 17J7-1T (= KCTC 62217T = JCM 33057T).
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