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X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
Crystal structure of mature myroilysin and implication for its activation mechanism
Tingting Ran1, Weidong Li1, Bo Sun2
1Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, 210095 Nanjing, China.
Abstract:
Myroilysin is a novel bacterial member of M12A metalloproteases family with an uncommon "cysteine switch" activation mechanism and a unique "cap" structure. However, activation of pro-myroilysin is elusive. Here, mature myroilysin was obtained for structure determination by treating pro-myroilysin with trypsin. The structure of mature myroilysin showed that the active-site zinc ion of the mature protein is coordinated by three histidine residues, a water molecule, and a tyrosine residue (Tyr208) in the conserved Met-turn motif (SIMHY). The "cap" structure moves away from the active-site to leave the active cleft open; the newly formed N-terminus is deeply buried in myroilysin, and Glu151 forms a salt bridge directly with the first amino acid residue (Gly38), whereas they are far from each other in the pro-myroilysin. The mutation of Tyr208 indicates that Tyr208 plays an important role in activity of myroilysin. The proteolytic activity and thermostability of mutant E151A decreased dramatically, implying that Glu151 is not only important for catalysis, but also crucial for structural stability in myroilysin. Structural comparison also reveals differences existed between myroilysin and astacin. Our biochemical and structural data provide new insights into the activation of myroilysin and functional involvement of crucial residues Tyr208 and Glu151.
Insights
Myroilysin, a bacterial metalloprotease, reveals its activation mechanism and structural secrets. Key residues Tyr208 and Glu151 are crucial for its activity and stability.
Area of Science:
- Biochemistry
- Structural Biology
- Enzymology
Background:
- Myroilysin is a novel bacterial M12A metalloprotease with a unique "cysteine switch" activation and "cap" structure.
- The activation mechanism of pro-myroilysin remained largely unelucidated prior to this study.
Purpose of the Study:
- To determine the structure of mature myroilysin and elucidate its activation mechanism.
- To investigate the functional roles of key residues Tyr208 and Glu151 in myroilysin activity and stability.
Main Methods:
- Obtained mature myroilysin by trypsin treatment of pro-myroilysin for structure determination.
- Performed site-directed mutagenesis (Tyr208 and Glu151) and analyzed proteolytic activity and thermostability.
- Conducted structural comparisons between myroilysin and astacin.
Main Results:
- Determined the crystal structure of mature myroilysin, revealing zinc ion coordination by His, water, and Tyr208 within the SIMHY motif.
- Observed significant conformational changes upon activation, including cap movement and N-terminus burial, with Glu151 forming a salt bridge with Gly38.
- Mutational analysis demonstrated Tyr208 is vital for activity, while Glu151 is critical for both catalysis and structural stability, with mutant E151A showing reduced activity and thermostability.
- Structural comparison highlighted differences between myroilysin and astacin.
Conclusions:
- The study provides novel insights into the activation mechanism of myroilysin, involving conformational changes and the role of the "cap" structure.
- Tyr208 and Glu151 are identified as crucial residues for myroilysin's catalytic function and structural integrity.
- Biochemical and structural data offer a foundation for understanding M12A metalloprotease activation and function.
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