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A novel jumbo Tenacibaculum maritimum lytic phage with head-fiber-like appendages
Yasuhiko Kawato1, Indah Istiqomah2,3, Alkhateib Y Gaafar2,4
1Nansei Main Station, National Research Institute of Aquaculture, Japan Fisheries Research and Education Agency, Watarai, Mie, Japan.
Abstract:
A novel jumbo bacteriophage (myovirus) is described. The lytic phage of Tenacibaculum maritimum, which is the etiological agent of tenacibaculosis in a variety of farmed marine fish worldwide, was plaque-isolated from seawater around a fish aquaculture field in Japan. The phage had an isometric head 110-120 nm in diameter, from which several 50- to 100-nm-long flexible fiber-like appendages emanate, and a 150-nm-long rigid contractile tail. The full genomes of the two representative phages (PTm1 and PTm5) were 224,680 and 226,876 bp long, respectively, both with 29.7% GC content, and the number of predicted open reading frames (ORFs) was 308 and 306, respectively. The average nucleotide sequence identity between PTm1 and PTm5 was 99.95%, indicating they are quite similar to each other. A genetic relationship was found in 15.0-16.6% of the predicted ORFs among the T. maritimum phages PTm1 and PTm5, the Tenacibaculum spp. phage pT24, and the Sphingomonas paucimobilis phage PAU. Phylogenetic analysis based on the terminase large subunit genes revealed that these four phages (PTm1, PTm5, pT24 and PAU) are more closely related than the other 10 jumbo myoviruses that have similar genome sizes. Transmission electron microscopy observations suggest that the head fibers of the T. maritimum phage function as tentacles to search and recognize the host cell surface to facilitate infection.
Insights
A novel jumbo bacteriophage targeting Tenacibaculum maritimum, a fish pathogen, was discovered. This phage exhibits unique head fibers potentially aiding host cell recognition for infection.
Area of Science:
- Microbiology
- Virology
- Aquaculture
Background:
- Tenacibaculum maritimum causes tenacibaculosis, a significant disease in farmed marine fish globally.
- Bacteriophages are viruses that infect bacteria and are being explored as potential biocontrol agents in aquaculture.
Purpose of the Study:
- To describe a novel jumbo bacteriophage (myovirus) isolated from seawater.
- To characterize the morphology, genome, and genetic relatedness of this phage.
- To investigate the function of the phage's head fibers in host interaction.
Main Methods:
- Plaque isolation of bacteriophages from seawater samples.
- Transmission electron microscopy for morphological analysis.
- Whole-genome sequencing and bioinformatic analysis of phage genomes.
- Phylogenetic analysis using the terminase large subunit gene.
Main Results:
- A novel jumbo myovirus infecting Tenacibaculum maritimum was isolated and characterized.
- The phage possesses a distinct morphology with a large head, flexible head fibers, and a contractile tail.
- Genome analysis revealed large genomes with numerous open reading frames, showing high similarity between closely related isolates.
- Phylogenetic analysis places this phage within a distinct cluster of jumbo myoviruses.
- Head fibers are hypothesized to function in host cell surface recognition.
Conclusions:
- The newly described bacteriophage represents a potential tool for managing tenacibaculosis in farmed fish.
- The unique structural features, particularly the head fibers, warrant further investigation for their role in phage-host interactions.
- This discovery contributes to the understanding of bacteriophage diversity and their application in aquaculture disease control.
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