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Updated: Jan 2, 2026

CRISPR-Mediated Reorganization of Chromatin Loop Structure
Published on: September 14, 2018
Loss of TOP3B leads to increased R-loop formation and genome instability
Tao Zhang1,2, Mathew Wallis3,4, Vida Petrovic5
1Murdoch Children's Research Institute, Royal Children's Hospital, Melbourne, Victoria 3052, Australia.
Abstract:
Topoisomerase III beta (TOP3B) is one of the least understood members of the topoisomerase family of proteins and remains enigmatic. Our recent data shed light on the function and relevance of TOP3B to disease. A homozygous deletion for the TOP3B gene was identified in a patient with bilateral renal cancer. Analyses in both patient and modelled human cells show the disruption of TOP3B causes genome instability with a rise in DNA damage and chromosome bridging (mis-segregation). The primary molecular defect underlying this pathology is a significant increase in R-loop formation. Our data show that TOP3B is necessary to prevent the accumulation of excessive R-loops and identify TOP3B as a putative cancer gene, and support recent data showing that R-loops are involved in cancer aetiology.
Insights
Topoisomerase III beta (TOP3B) disruption causes genome instability and DNA damage by increasing R-loop formation. This finding identifies TOP3B as a potential cancer gene involved in renal cancer aetiology.
Area of Science:
- Genetics
- Molecular Biology
- Oncology
Background:
- Topoisomerase III beta (TOP3B) is a poorly understood protein.
- Its role in disease, particularly cancer, is largely unknown.
- R-loops are implicated in various pathologies, including cancer.
Purpose of the Study:
- To investigate the function and disease relevance of TOP3B.
- To elucidate the molecular mechanisms underlying TOP3B disruption.
- To assess TOP3B as a potential cancer gene.
Main Methods:
- Analysis of a patient with a homozygous TOP3B deletion and bilateral renal cancer.
- Cellular studies using modelled human cells with TOP3B disruption.
- Assessment of genome instability, DNA damage, and R-loop formation.
Main Results:
- TOP3B disruption leads to genome instability, increased DNA damage, and chromosome bridging.
- The primary molecular defect is a significant increase in R-loop accumulation.
- TOP3B is essential for preventing excessive R-loop formation.
Conclusions:
- TOP3B is crucial for maintaining genome stability by regulating R-loop levels.
- TOP3B is identified as a putative cancer gene.
- These findings support the role of R-loops in cancer development and highlight TOP3B as a potential therapeutic target.
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