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Reliably Engineering and Controlling Stable Optogenetic Gene Circuits in Mammalian Cells
Published on: July 6, 2021
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Controlling cell-to-cell variability with synthetic gene circuits.
Asli Azizoglu1, Jörg Stelling1
1Department of Biosystems Science and Engineering and SIB Swiss Institute of Bioinformatics, ETH Zurich, 4058 Basel, Switzerland.
Biochemical Society Transactions
|December 6, 2019
Summary
Synthetic biology offers tools to control gene expression noise, enhancing synthetic gene circuit robustness. Future advances require new control theories and exploring noise shaping for novel functions.
Area of Science:
- Synthetic Biology
- Systems Biology
- Genetic Engineering
Background:
- Cell-to-cell variability, often from gene expression stochasticity, challenges synthetic gene circuit design.
- Synthetic biology provides tools to understand and mitigate this variability in biological systems.
Purpose of the Study:
- To review synthetic biology approaches for controlling gene expression noise.
- To propose future directions for robust synthetic circuit design and understanding natural systems.
Main Methods:
- Engineering transcription and translation for independent regulation of expression mean and variability.
- Implementing synthetic feedback circuits for closed-loop control.
- Reviewing existing synthetic biology toolsets for noise reduction.
Main Results:
- A broad synthetic toolset exists for noise control at transcription and translation levels.
- Synthetic feedback circuits can improve robustness by extending engineering concepts.
- Current approaches focus on noise reduction, but noise shaping may offer new functions.
Conclusions:
- Advances require new biological control theories and network-level considerations.
- Exploring variability origins beyond intrinsic noise is crucial.
- Noise shaping, not just reduction, could unlock novel synthetic and natural functions.
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