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Updated: Jan 2, 2026

Split-BioID — Proteomic Analysis of Context-specific Protein Complexes in Their Native Cellular Environment
Published on: April 20, 2018
Development of a Split Esterase for Protein-Protein Interaction-Dependent Small-Molecule Activation
Krysten A Jones1, Kaitlin Kentala1, Michael W Beck1
1Department of Chemistry, The University of Chicago, Chicago, Illinois 60637, United States.
Researchers developed a split esterase system to generate small molecules based on biological signals. This innovation enables targeted drug delivery, imaging, and cell killing, advancing synthetic biology applications.
Area of Science:
- Synthetic Biology
- Molecular Biology
- Biochemistry
Background:
- Split reporters (fluorescent proteins, luciferases) are vital for measuring biological interactions.
- Biosensors are key for engineered gene circuits in synthetic biology.
- A general method for generating small molecules based on biological signals is currently lacking.
Purpose of the Study:
- To develop a proximity-dependent split esterase for interaction-dependent small molecule unmasking.
- To demonstrate the versatility of ester-protected small molecules for generating various probes.
- To explore applications in protein-protein interaction studies, drug development, and cell-based therapies.
Main Methods:
- Developed a proximity-dependent split esterase system.
- Utilized ester-protected small molecules for probe generation (fluorescent, chemiluminescent, pharmacological).
- Integrated the split esterase with ester-masked probes for interaction detection and cell killing.
Main Results:
- Demonstrated fluorescent, chemiluminescent, and pharmacological probe generation via ester unmasking.
- Successfully measured protein-protein interactions and inhibitor engagement using the split esterase system.
- Showcased selective small-molecule-dependent cell killing and intercellular killing via bystander effect.
- Confirmed compatibility with other split reporter systems for multiplexed detection.
Conclusions:
- The split esterase system is a versatile addition to the split protein toolbox.
- This system offers significant potential for synthetic biology applications, including targeted therapies.
- Enables precise control over small molecule generation in response to biological signals.
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