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Updated: Jan 2, 2026

Preparation of Formalin-fixed Paraffin-embedded Tissue Cores for both RNA and DNA Extraction
Published on: August 21, 2016
[IDENTIFICATION OF COMINGLED TISSUE WITHIN A FORMALIN-FIXED PARAFFIN-EMBEDDED SAMPLE USING FORENSIC GENETICS - A TOOL
Anat Gast1, Dania Shachar1, Andrei Kotik1
1National Center of Forensic Medicine.
Forensic DNA analysis detected cross-contamination in formalin-fixed, paraffin-embedded (FFPE) tissues, preventing misdiagnosis. This case highlights the importance of molecular techniques in ensuring accurate pathological evaluations of biopsy specimens.
Area of Science:
- Forensic Genetics
- Molecular Pathology
- Biopathology
Background:
- Formalin-fixed, paraffin-embedded (FFPE) tissue processing is standard for biopsy evaluation.
- Histopathology cannot detect cross-contamination of tissues from different patients.
- Forensic genetic procedures ensure reliable DNA profiles from degraded samples like FFPE tissues.
Purpose of the Study:
- To demonstrate the utility of forensic genetics in detecting FFPE tissue cross-contamination.
- To prevent misdiagnosis and inappropriate treatment due to sample mix-ups.
Main Methods:
- DNA extraction from FFPE tissue fragments.
- Short Tandem Repeat (STR) analysis for DNA profiling.
- Comparison of DNA profiles against patient reference samples.
Main Results:
- Initial DNA analysis of FFPE tissues matched the patient.
- Detection of minor additional alleles suggested a second contributor.
- Targeted DNA extraction from a specific lesion revealed a male DNA profile, confirming cross-contamination.
Conclusions:
- Forensic genetic analysis effectively identified cross-contamination in FFPE colon tissue.
- Collaboration between medical examiners and forensic labs is crucial for accurate diagnosis.
- Molecular techniques prevent misdiagnosis and ensure patient safety.
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