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p53-induced ARVCF modulates the splicing landscape and supports the tumor suppressive function of p53
Natsumi Suzuki1, Masashi Idogawa2,3, Shoichiro Tange1
1Department of Medical Genome Sciences, Research Institute for Frontier Medicine, Sapporo Medical University School of Medicine, Sapporo, Japan.
Abstract:
p53 is one of the most important tumor suppressor genes, and the exploration of p53-target genes is important for elucidation of its functional mechanisms. In this study, we identified Armadillo Repeat gene deleted in Velo-Cardio-Facial syndrome (ARVCF) as a direct target of p53 through ChIP-sequencing analysis. Activated p53 protein was found to bind to two distinct sites in the ARVCF gene, resulting in induction of ARVCF expression at both the mRNA and protein levels. We revealed that the knockdown of ARVCF inhibited p53-induced apoptosis. Interestingly, ARVCF interacted with hnRNPH2, which is involved in pre-mRNA splicing, and ARVCF knockdown induced dynamic changes in alternative splicing patterns. These results suggest that p53-induced ARVCF indirectly, but not directly, regulates p53 target selectivity through splicing alterations of specific genes. Thus, we demonstrated that the induction of ARVCF expression contributed to the tumor suppressive function of p53. Recently, it has been reported that many tumors have thousands of alternative splicing events that are not detectable in normal samples. ARVCF may play a role in alternative splicing events in cancer and may provide clues to explore novel approaches for cancer diagnosis and therapy.
Insights
The tumor suppressor p53 directly targets the ARVCF gene, which is crucial for p53-induced apoptosis. ARVCF influences gene splicing, contributing to p53
Area of Science:
- Molecular Biology
- Cancer Biology
- Genetics
Background:
- The p53 tumor suppressor gene plays a critical role in cancer prevention.
- Understanding p53 target genes is essential for deciphering its tumor-suppressive functions.
Purpose of the Study:
- To identify direct p53 target genes.
- To investigate the role of ARVCF in p53-mediated cellular processes.
- To explore the connection between ARVCF, splicing, and cancer.
Main Methods:
- ChIP-sequencing to identify p53 binding sites.
- mRNA and protein expression analysis.
- RNA interference (RNAi) for gene knockdown.
- Analysis of alternative splicing patterns.
Main Results:
- ARVCF was identified as a direct p53 target gene, with p53 binding to two sites within the ARVCF locus.
- p53 activation led to increased ARVCF expression at both mRNA and protein levels.
- ARVCF knockdown inhibited p53-induced apoptosis.
- ARVCF interacts with hnRNPH2, a splicing factor, and its knockdown altered alternative splicing patterns.
- p53-induced ARVCF indirectly regulates p53 target selectivity via splicing alterations.
Conclusions:
- ARVCF induction contributes to the tumor suppressive function of p53.
- ARVCF's role in alternative splicing in cancer suggests potential as a diagnostic and therapeutic target.
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