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Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
A Subset of Colorectal Cancers with Cross-Sensitivity to Olaparib and Oxaliplatin
Sabrina Arena1,2, Giorgio Corti1, Erika Durinikova1
1Candiolo Cancer Institute, FPO - IRCCS, Candiolo, Torino, Italy.
Purpose:
Defects in the homologous recombination (HR) repair pathway are of clinical interest due to sensitivity of HR-deficient cells to PARP inhibitors. We were interested in defining PARP vulnerability in patients with metastatic colorectal cancer (mCRC) carrying KRAS and BRAF mutations who display poor prognosis, have limited therapeutic options, and represent an unmet clinical need.
Experimental Design:
We tested colorectal cancer cell lines, patient-derived organoids (PDO), and patient-derived xenografts (PDX) enriched for KRAS and BRAF mutations for sensitivity to the PARP inhibitor olaparib, and the chemotherapeutic agents oxaliplatin and 5-fluorouracil (5-FU). Genomic profiles and DNA repair proficiency of colorectal cancer models were compared with pharmacologic response.
Results:
Thirteen of 99 (around 13%) colorectal cancer cell lines were highly sensitive to clinically active concentrations of olaparib and displayed functional deficiency in HR. Response to PARP blockade was positively correlated with sensitivity to oxaliplatin in colorectal cancer cell lines as well as patient-derived organoids. Treatment of PDXs with olaparib impaired tumor growth and maintenance therapy with PARP blockade after initial oxaliplatin response delayed disease progression in mice.
Conclusions:
These results indicate that a colorectal cancer subset characterized by poor prognosis and limited therapeutic options is vulnerable to PARP inhibition and suggest that PDO-based drug-screening assays can be used to identify patients with colorectal cancer likely to benefit from olaparib. As patients with mCRC almost invariably receive therapies based on oxaliplatin, "maintenance" treatment with PARP inhibitors warrants further clinical investigation.
Insights
Metastatic colorectal cancer (mCRC) with KRAS/BRAF mutations shows vulnerability to PARP inhibitors like olaparib. Patient-derived models can predict response, suggesting PARP inhibitors as maintenance therapy after oxaliplatin.
Area of Science:
- Oncology
- Genetics
- Pharmacology
Background:
- Homologous recombination (HR) repair defects confer sensitivity to PARP inhibitors.
- Metastatic colorectal cancer (mCRC) with KRAS/BRAF mutations has poor prognosis and limited treatment options.
- Identifying novel therapeutic vulnerabilities in mCRC is an unmet clinical need.
Purpose of the Study:
- To define PARP inhibitor vulnerability in mCRC patients with KRAS/BRAF mutations.
- To evaluate the efficacy of olaparib in preclinical mCRC models.
- To explore the potential of patient-derived models for drug screening.
Main Methods:
- Tested colorectal cancer cell lines, patient-derived organoids (PDOs), and patient-derived xenografts (PDXs) with KRAS/BRAF mutations for sensitivity to olaparib, oxaliplatin, and 5-FU.
- Assessed genomic profiles and DNA repair proficiency.
- Correlated pharmacologic response with molecular characteristics.
Main Results:
- 13% of colorectal cancer cell lines with HR deficiency were highly sensitive to olaparib.
- Sensitivity to olaparib correlated with oxaliplatin sensitivity in cell lines and PDOs.
- Olaparib impaired tumor growth in PDXs, and maintenance therapy delayed progression after oxaliplatin.
Conclusions:
- A subset of mCRC with KRAS/BRAF mutations is vulnerable to PARP inhibition.
- PDO-based drug screening can identify patients likely to benefit from olaparib.
- Maintenance therapy with PARP inhibitors warrants clinical investigation for mCRC patients receiving oxaliplatin.
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