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Updated: Jan 1, 2026

Multiplex PCR Assay for Typing of Staphylococcal Cassette Chromosome Mec Types I to V in Methicillin-resistant Staphylococcus aureus
Published on: September 5, 2013
Relationship between biofilm gene expression with antimicrobial resistance pattern and clinical specimen type based
Hamed Tahmasebi1, Sanaz Dehbashi2, Mojdeh Jahantigh1
1Department of Microbiology, Zahedan University of Medical Sciences, Zahedan, Iran.
Abstract:
The ica genes in methicillin-resistant Staphylococcus aureus (MRSA) play an important role in biofilm formation. The aim of this study is to define effect of antibiotic resistance and clinical specimens to the expression of ica genes based on their sequence types (STs) and clonal complex (CC). One-hundred (100) S. aureus strain were collected from two teaching therapeutic centers in Hamedan, Iran. Then, the PCR, qPCR, and MLST were used to characterize strains. The results indicated that 29 (29%), 15 (15%), and 5 (5%) strain were strong, mediate, weak biofilm producer, respectively, and the icaA (17%) and icaC (14%) genes were the most abundant. However, two unique STs (3667, 491) in Iran were reported and ST30 and ST11 were the most abundant STs and CC30 and CC5 were observed among MRSA and MSSA strains. High activity in ica locus was observed among strains collected from wound and catheter strains. Also, expression level of icaA gene increased in all strains except ST30 and ST491. Moreover, the highest expression level was observed in CC1, CC7, and CC11. Likewise, activity of the icaC gene was only observed in CC5. Furthermore, the expression of all ica genes in CC5 was significantly correlated with the type of biofilm and the clinical sample. In this study demonstrated that the frequency distribution of STs and CCs in different strains of MRSA was higher than methicillin-sensitive strains. Also, the type of clinical specimen and expression of ica genes played an important role in this abundance.
Insights
The ica genes in methicillin-resistant Staphylococcus aureus (MRSA) influence biofilm formation, with expression varying by antibiotic resistance, sequence type, and clinical source. MRSA strains showed greater sequence type and clonal complex diversity than methicillin-sensitive strains.
Area of Science:
- Microbiology
- Genetics
- Infectious Diseases
Background:
- The ica genes are crucial for biofilm formation in Staphylococcus aureus, including methicillin-resistant strains (MRSA).
- Understanding the regulation of ica gene expression is vital for combating persistent bacterial infections.
- Antibiotic resistance and clinical source can influence bacterial virulence factors like biofilm production.
Purpose of the Study:
- To investigate the impact of antibiotic resistance and clinical specimen origin on ica gene expression in Staphylococcus aureus.
- To correlate ica gene expression patterns with specific sequence types (STs) and clonal complexes (CCs).
- To analyze the prevalence and distribution of STs and CCs in MRSA and methicillin-sensitive S. aureus (MSSA) strains.
Main Methods:
- Polymerase Chain Reaction (PCR) and quantitative PCR (qPCR) were used to detect and quantify ica gene presence and expression.
- Multilocus Sequence Typing (MLST) was employed to determine the STs and CCs of the S. aureus isolates.
- Strains were collected from two teaching hospitals in Hamedan, Iran, and characterized for biofilm production.
Main Results:
- 29% of strains were strong biofilm producers; icaA and icaC genes were most abundant.
- Unique STs (3667, 491) were identified in Iran; ST30 and ST11 were most common.
- ica locus activity was high in wound and catheter isolates; icaA expression increased in most strains, while icaC was specific to CC5.
- MRSA strains exhibited higher ST and CC diversity compared to MSSA strains.
- ica gene expression in CC5 correlated significantly with biofilm type and clinical sample source.
Conclusions:
- Clinical specimen type and ica gene expression are significant factors in S. aureus abundance and virulence.
- MRSA strains demonstrate greater genetic diversity (STs and CCs) than MSSA strains.
- The study highlights the complex interplay between host factors, bacterial genetics, and biofilm formation in S. aureus infections.
Related Concept Videos
Modern Molecular Taxonomy
Development of Antibiotic Resistance
Biofilms
Gene Regulation in Microbial Communities: Quorum Sensing
Antibiotic Selection
Applications of Molecular Taxonomy

