The impact of different mutations at arginine141 on the structure, subunit exchange dynamics and chaperone activity
Alok Kumar Panda1, Ayon Chakraborty2, Sandip Kumar Nandi2
1School of Applied Sciences, KIIT Deemed to be University, Bhubaneswar, Odisha, India.
Abstract:
Hsp16.3, a molecular chaperone, plays a vital role in the growth and survival of Mycobacterium tuberculosis inside the host. We previously reported that deletion of three amino acid residues (142 STN144 ) from C-terminal extension (CTE) of Hsp16.3 triggers its structural perturbation and increases its chaperone activity, which reaches its apex upon the deletion of its entire CTE (141 RSTN144 ). Thus, we hypothesized that Arg141 (R141) and Ser142 (S142) in the CTE of Hsp16.3 possibly hold the key in maintaining its native-like structure and chaperone activity. To test this hypothesis, we generated two deletion mutants in which R141 and S142 were deleted individually (Hsp16.3ΔR141 and Hsp16.3ΔS142) and three substitution mutants in which R141 was replaced by lysine (Hsp16.3R141K), alanine (Hsp16.3R141A), and glutamic acid (Hsp16.3R141E), respectively. Hsp16.3ΔS142 or Hsp16.3R141K mutant has native-like structure and chaperone activity. Deletion of R141 from the CTE (Hsp16.3ΔR141) perturbs the secondary and tertiary structure, lowers the subunit exchange dynamics and decreases the chaperone activity of Hsp16.3. But, the substitution of R141 with alanine (Hsp16.3R141A) or glutamic acid (Hsp16.3R141E) perturbs its secondary and tertiary structure. Surprisingly, such charge tampering of R141 enhances the subunit exchange dynamics and chaperone activity of Hsp16.3. Interestingly, neither the deletion of R141/S142 nor the substitution of R141 with lysine, alanine and glutamic acid affects the oligomeric mass/size of Hsp16.3. Overall, our study suggests that R141 (especially the positive charge on R141) plays a crucial role in maintaining the native-like structure as well as in regulating subunit exchange dynamics and chaperone activity of Hsp16.3.
Insights
The positive charge on arginine 141 (R141) in Mycobacterium tuberculosis Hsp16.3 is crucial for maintaining its native structure and chaperone activity. Modifying R141 impacts structure but can enhance chaperone function and dynamics.
Area of Science:
- Biochemistry
- Molecular Biology
- Microbiology
Background:
- Hsp16.3 is a molecular chaperone essential for Mycobacterium tuberculosis survival within hosts.
- Previous studies showed C-terminal extension (CTE) deletions alter Hsp16.3 structure and chaperone activity.
Purpose of the Study:
- To investigate the role of specific residues (Arg141 and Ser142) in the CTE of Hsp16.3.
- To determine how modifications to R141 affect Hsp16.3 structure, dynamics, and chaperone activity.
Main Methods:
- Generated deletion mutants (Hsp16.3ΔR141, Hsp16.3ΔS142) and substitution mutants (Hsp16.3R141K, Hsp16.3R141A, Hsp16.3R141E).
- Assessed structural integrity (secondary and tertiary), subunit exchange dynamics, and chaperone activity of the mutants.
- Determined oligomeric mass/size of Hsp16.3 variants.
Main Results:
- Hsp16.3ΔS142 and Hsp16.3R141K retained native-like structure and chaperone activity.
- Deletion of R141 (Hsp16.3ΔR141) decreased chaperone activity and altered structure and dynamics.
- Substitution of R141 with alanine or glutamic acid (Hsp16.3R141A, Hsp16.3R141E) perturbed structure but enhanced subunit exchange and chaperone activity.
- Oligomeric mass/size remained unaffected across all tested mutants.
Conclusions:
- Arg141 (R141) in Hsp16.3's CTE is critical for maintaining native structure and regulating chaperone activity.
- The positive charge of R141 is particularly important for these functions.
- Modifications at R141 can decouple structural integrity from chaperone activity, suggesting complex regulatory mechanisms.
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