The impact of different mutations at arginine141 on the structure, subunit exchange dynamics and chaperone activity

Alok Kumar Panda1, Ayon Chakraborty2, Sandip Kumar Nandi2

  • 1School of Applied Sciences, KIIT Deemed to be University, Bhubaneswar, Odisha, India.

Proteins
|December 21, 2019
PubMed

Insights

The positive charge on arginine 141 (R141) in Mycobacterium tuberculosis Hsp16.3 is crucial for maintaining its native structure and chaperone activity. Modifying R141 impacts structure but can enhance chaperone function and dynamics.

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Microbiology

Background:

  • Hsp16.3 is a molecular chaperone essential for Mycobacterium tuberculosis survival within hosts.
  • Previous studies showed C-terminal extension (CTE) deletions alter Hsp16.3 structure and chaperone activity.

Purpose of the Study:

  • To investigate the role of specific residues (Arg141 and Ser142) in the CTE of Hsp16.3.
  • To determine how modifications to R141 affect Hsp16.3 structure, dynamics, and chaperone activity.

Main Methods:

  • Generated deletion mutants (Hsp16.3ΔR141, Hsp16.3ΔS142) and substitution mutants (Hsp16.3R141K, Hsp16.3R141A, Hsp16.3R141E).
  • Assessed structural integrity (secondary and tertiary), subunit exchange dynamics, and chaperone activity of the mutants.
  • Determined oligomeric mass/size of Hsp16.3 variants.

Main Results:

  • Hsp16.3ΔS142 and Hsp16.3R141K retained native-like structure and chaperone activity.
  • Deletion of R141 (Hsp16.3ΔR141) decreased chaperone activity and altered structure and dynamics.
  • Substitution of R141 with alanine or glutamic acid (Hsp16.3R141A, Hsp16.3R141E) perturbed structure but enhanced subunit exchange and chaperone activity.
  • Oligomeric mass/size remained unaffected across all tested mutants.

Conclusions:

  • Arg141 (R141) in Hsp16.3's CTE is critical for maintaining native structure and regulating chaperone activity.
  • The positive charge of R141 is particularly important for these functions.
  • Modifications at R141 can decouple structural integrity from chaperone activity, suggesting complex regulatory mechanisms.

Related Concept Videos

Molecular Chaperones and Protein Folding03:00

Molecular Chaperones and Protein Folding

The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
19.5K
Bacterial Protein Maturation01:26

Bacterial Protein Maturation

Bacterial protein maturation is a tightly regulated process that ensures newly synthesized polypeptides achieve correct functional conformations. This maturation involves a series of modifications, folding events, and quality control steps, often assisted by specialized chaperone proteins.N-Terminal ModificationsThe maturation of bacterial polypeptides begins cotranslationally as the polypeptide exits the ribosome. The first amino acid, N-formylmethionine (fMet), is typically modified at the...
392
Conservation of Protein Domains Over Different Proteins02:26

Conservation of Protein Domains Over Different Proteins

Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
13.9K