Structure-activity relationships of fluorene compounds inhibiting HCV variants
Related Experiment Video
Updated: Jan 1, 2026

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
Hee Sun Kim1, Youngsu You2, Jaegon Mun3
1Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, Pohang, 37673, South Korea.
Abstract:
Approximately 71 million people suffer from hepatitis C virus (HCV) infection worldwide. Persistent HCV infection causes liver diseases such as chronic hepatitis, liver cirrhosis, and hepatocellular carcinoma, resulting in approximately 400,000 deaths annually. Effective direct-acting antiviral agents (DAAs) have been developed and are currently used for HCV treatment targeting the following three proteins: NS3/4A proteinase that cleaves the HCV polyprotein into various functional proteins, RNA-dependent RNA polymerase (designated as NS5B), and NS5A, which is required for the formation of double membrane vesicles serving as RNA replication organelles. At least one compound inhibiting NS5A is included in current HCV treatment regimens due to the high efficacy and low toxicity of drugs targeting NS5A. Here we report fluorene compounds showing strong inhibitory effects on GT 1b and 3a of HCV. Moreover, some compounds were effective against resistance-associated variants to DAAs. The structure-activity relationships of the compounds were analyzed. Furthermore, we investigated the molecular bases of the inhibitory activities of some compounds by the molecular docking method.
Insights
New fluorene compounds show potent activity against Hepatitis C Virus (HCV), including drug-resistant strains. These findings offer promising avenues for developing novel antiviral therapies for HCV infection.
Area of Science:
- Hepatology
- Virology
- Medicinal Chemistry
Background:
- Hepatitis C Virus (HCV) infects 71 million globally, causing severe liver diseases and 400,000 annual deaths.
- Direct-acting antiviral agents (DAAs) target key HCV proteins like NS3/4A, NS5B, and NS5A.
- NS5A inhibitors are crucial in current HCV treatment due to high efficacy and low toxicity.
Purpose of the Study:
- To identify novel fluorene compounds with potent anti-HCV activity.
- To evaluate compound efficacy against different HCV genotypes and drug-resistant variants.
- To elucidate the structure-activity relationships and molecular mechanisms of inhibition.
Main Methods:
- Synthesis and screening of fluorene derivatives for HCV inhibition.
- Testing against Hepatitis C Virus genotypes 1b and 3a.
- Assessment of activity against DAA-resistance associated variants.
- Structure-activity relationship analysis.
- Molecular docking studies to investigate binding interactions.
Main Results:
- Fluorene compounds demonstrated significant inhibitory effects on HCV GT 1b and 3a.
- Several compounds were effective against resistance-associated variants to existing DAAs.
- Structure-activity relationships were established for the fluorene series.
- Molecular docking provided insights into the binding modes and mechanisms of inhibition.
Conclusions:
- Fluorene compounds represent a promising class of novel antiviral agents against HCV.
- These compounds show potential for overcoming DAA resistance.
- Further investigation is warranted for the development of new HCV therapeutics.
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