Related Experiment Video
Updated: Jan 1, 2026

Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation
Published on: May 20, 2020
Ab initio Molecular Dynamics Simulation Study of Dissociation Electron Attachment to Lactic Acid and Isomer
Ying Zhang1, Zhongfeng Xu2, Yongtao Zhao2
1School of science, Xi'an Jiaotong University, Xi'an, Shaanxi, 710049, China. zhangying15@stu.xjtu.edu.cn.
Abstract:
Dissociation processes of lactic acid and its isomer formed by low-energy dissociation electron attachment (DEA) in the gas phase are investigated by using ab initio molecular dynamics (MD) simulations. The ab initio MD simulations using an atom-centered density matrix propagation (ADMP) method are carried out to investigate the DEA dissociation process of lactic acid and its isomer. The analysis of the simulated dissociation trajectories of lactic acid and its isomer indicates that the C-C, C-H, and C-O bonds are cleaved within femtoseconds of the simulation time scale in the DEA dissociation process, and the difference in dissociation trajectory depends on the size of the three basis sets. The simulation results enable us to gain insights into the DEA dissociation process of lactic acid and its isomer. In this work, we present a comparative study of the 6-31 + G(d,p), 6-311++G(2d,2p), and Aug-cc-pVDZ basis sets of the DEA dissociation simulation of lactic acid and its isomer. The comparative study results indicate that the 6-311++G(2d,2p) is an excellent basis set for the ADMP trajectory simulation of lactic acid and its isomer in the DEA dissociation process. The natural bond orbital (NBO) analysis is carried out to characterize variation in the charge population and charge transfer accompanied by the C-C, C-H, and C-O bond dissociation processes for lactic acid and its isomer in the ADMP trajectory simulation. ADMP simulation and NBO analysis of the dissociation trajectory is considered an important initial and decisive step in DEA dissociation dynamics for lactic acid and its isomer.
More Related Videos
07:31Author Spotlight: Advancing Cell Membrane Biophysics - Exploring Interactions and Challenges Through Experimental and Computational Approaches
Published on: September 1, 2023
05:57Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
Published on: April 26, 2024
Related Concept Videos
Alkylation of β-Diester Enolates: Malonic Ester Synthesis
Loss of Carboxy Group as CO2: Decarboxylation of Malonic Acid Derivatives
Mass Spectrometry: Carboxylic Acid, Ester, and Amide Fragmentation
For example, the...
Mass Spectrometry: Molecular Fragmentation Overview
One type of fragmentation pattern is the cleavage of a single bond in the molecular ion. The cleavage leads to a radical and a cation. The cleavage can occur at...
Molecular Models
Intramolecular Aldol Reaction